Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42100 * 110.54230 * 2 1 4 4 O 1.42104 * 110.53857 * 223.25487 * 2 1 3 5 5 C 1.76196 * 104.45335 * 111.62829 * 2 1 3 6 6 N 1.30497 * 125.65119 * 270.17985 * 5 2 1 7 7 C 1.34122 * 109.25932 * 180.28809 * 6 5 2 8 8 C 1.34673 * 108.01902 * 359.72259 * 7 6 5 9 9 N 1.35040 * 125.64951 * 89.99367 * 5 2 1 10 10 C 1.46499 * 126.39959 * 359.97438 * 9 5 2 11 11 C 1.52998 * 109.47392 * 92.30513 * 10 9 5 12 12 C 1.50698 * 115.55156 * 176.97472 * 11 10 9 13 13 H 1.08002 * 119.99543 * 219.67542 * 12 11 10 14 14 C 1.37876 * 120.00103 * 39.67267 * 12 11 10 15 15 N 1.31506 * 119.99943 * 5.75237 * 14 12 11 16 16 Si 1.86796 * 119.99744 * 185.75069 * 14 12 11 17 17 H 1.48500 * 109.47096 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47284 * 300.00084 * 16 14 12 19 19 H 1.48502 * 109.47010 * 60.00282 * 16 14 12 20 20 C 1.53010 * 117.51451 * 322.67423 * 11 10 9 21 21 C 1.53002 * 59.99964 * 107.47996 * 20 11 10 22 22 H 1.09004 * 109.46921 * 308.37676 * 1 2 3 23 23 H 1.08996 * 109.47292 * 68.37150 * 1 2 3 24 24 H 1.09002 * 109.47334 * 188.37135 * 1 2 3 25 25 H 1.07995 * 125.99183 * 179.72037 * 7 6 5 26 26 H 1.07993 * 126.59227 * 180.02562 * 8 7 6 27 27 H 1.09001 * 109.46895 * 332.30508 * 10 9 5 28 28 H 1.08997 * 109.46942 * 212.30672 * 10 9 5 29 29 H 0.97001 * 120.00100 * 174.99461 * 15 14 12 30 30 H 1.08995 * 117.49531 * 214.96704 * 20 11 10 31 31 H 1.08996 * 117.49688 * 359.97438 * 20 11 10 32 32 H 1.08996 * 117.49740 * 252.50903 * 21 20 11 33 33 H 1.09001 * 117.49899 * 107.49007 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 6 2.2538 -0.6289 1.5861 6 7 2.4404 0.0851 2.6624 7 6 2.7689 -0.7253 3.6794 8 6 2.7805 -1.9902 3.2171 9 7 2.4501 -1.9299 1.8901 10 6 2.3367 -3.0643 0.9702 11 6 3.7066 -3.3634 0.3579 12 6 3.7616 -4.5569 -0.5605 13 1 4.6141 -5.2194 -0.5345 14 6 2.7235 -4.8031 -1.4339 15 7 1.7399 -3.9375 -1.5469 16 14 2.7143 -6.3661 -2.4567 17 1 1.4983 -6.3930 -3.3087 18 1 3.9236 -6.4014 -3.3177 19 1 2.7132 -7.5469 -1.5561 20 6 4.6064 -2.1720 0.0227 21 6 4.9414 -3.0727 1.2133 22 1 -0.3633 0.6380 0.8057 23 1 -0.3634 0.3788 -0.9553 24 1 -0.3634 -1.0167 0.1496 25 1 2.9860 -0.4175 4.6915 26 1 3.0065 -2.8808 3.7844 27 1 1.6299 -2.8198 0.1772 28 1 1.9833 -3.9398 1.5148 29 1 1.0476 -4.0742 -2.2124 30 1 5.2380 -2.2516 -0.8620 31 1 4.2222 -1.1750 0.2381 32 1 4.7778 -2.6681 2.2121 33 1 5.7936 -3.7448 1.1118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594889523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = 13.992138 kcal Electronic energy + Delta-G solvation = -19889.974857 eV Core-core repulsion = 16852.227214 eV Total energy + Delta-G solvation = -3037.747643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.14574 -38.74402 -37.84790 -36.84043 -34.29392 -33.92403 -30.89939 -30.24036 -28.36752 -27.11775 -23.45374 -23.06881 -22.22649 -21.28420 -19.60440 -18.59233 -18.20922 -17.37621 -16.81169 -16.57311 -16.37544 -16.31025 -15.21188 -15.10109 -14.75230 -14.17934 -14.02261 -13.95960 -13.76967 -13.45046 -13.07915 -12.84271 -12.81141 -12.68104 -12.37695 -12.25535 -12.09088 -11.83357 -11.66886 -11.28778 -10.95188 -10.76394 -10.41531 -9.98733 -9.74512 -8.01596 -6.14449 -0.85942 0.71075 1.48034 1.50020 1.56608 1.78404 1.89577 2.00110 2.46488 3.02547 3.04754 3.26913 3.58928 3.87043 4.05929 4.14327 4.22558 4.27590 4.41294 4.53642 4.59823 4.81612 4.85684 4.86951 4.93222 5.21727 5.38138 5.47274 5.49856 5.74622 5.91119 5.99439 6.39093 6.78595 6.82842 7.46910 8.98031 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.008648 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.246243 B = 3237.106573 C = 3850.231318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.502 3.498 3 O -0.966 6.966 4 O -0.907 6.907 5 C -0.355 4.355 6 N -0.440 5.440 7 C -0.051 4.051 8 C -0.014 4.014 9 N -0.387 5.387 10 C 0.121 3.879 11 C 0.042 3.958 12 C -0.520 4.520 13 H 0.053 0.947 14 C 0.036 3.964 15 N -0.874 5.874 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.186 4.186 21 C -0.208 4.208 22 H 0.152 0.848 23 H 0.163 0.837 24 H 0.145 0.855 25 H 0.206 0.794 26 H 0.207 0.793 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.268 0.732 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 2.954 6.310 9.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.773 4.773 2 S 2.677 3.323 3 O -0.962 6.962 4 O -0.904 6.904 5 C -0.692 4.692 6 N -0.161 5.161 7 C -0.205 4.205 8 C -0.155 4.155 9 N -0.065 5.065 10 C 0.001 3.999 11 C 0.041 3.959 12 C -0.557 4.557 13 H 0.071 0.929 14 C -0.167 4.167 15 N -0.510 5.510 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.224 4.224 21 C -0.245 4.245 22 H 0.170 0.830 23 H 0.181 0.819 24 H 0.164 0.836 25 H 0.223 0.777 26 H 0.224 0.776 27 H 0.164 0.836 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.887 3.913 5.500 8.956 hybrid contribution 0.215 -1.745 0.051 1.759 sum -5.672 2.168 5.550 8.227 Atomic orbital electron populations 1.29982 1.19470 1.13716 1.14170 1.05689 0.80758 0.73730 0.72143 1.93516 1.79836 1.37471 1.85413 1.93892 1.78349 1.59976 1.58134 1.36468 1.23216 0.88261 1.21215 1.70157 1.13989 1.33773 0.98174 1.23104 1.07949 0.89249 1.00170 1.23768 1.04671 1.02292 0.84783 1.45865 1.43996 1.07076 1.09576 1.22387 1.01305 0.84863 0.91378 1.19106 0.86489 0.94309 0.95994 1.20560 1.04811 1.08996 1.21364 0.92883 1.25572 0.94993 0.98805 0.97360 1.69737 1.12686 1.34785 1.33779 0.85697 0.77237 0.80455 0.78624 1.20396 1.21075 1.19547 1.22723 1.06972 0.95265 0.97472 1.23164 1.02017 1.04417 0.94899 0.82982 0.81935 0.83649 0.77728 0.77596 0.83634 0.89558 0.92208 0.92270 0.92441 0.89520 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -13.63 10.80 113.37 1.22 -12.40 16 2 S 2.50 88.24 5.37 -56.49 -0.30 87.94 16 3 O -0.97 -39.40 17.93 -127.65 -2.29 -41.68 16 4 O -0.91 -39.27 12.85 -127.65 -1.64 -40.91 16 5 C -0.36 -13.40 6.14 180.26 1.11 -12.29 16 6 N -0.44 -16.41 11.23 -197.75 -2.22 -18.63 16 7 C -0.05 -1.56 11.87 83.53 0.99 -0.57 16 8 C -0.01 -0.45 9.46 83.09 0.79 0.34 16 9 N -0.39 -14.33 1.95 -525.97 -1.03 -15.35 16 10 C 0.12 5.07 4.84 86.38 0.42 5.48 16 11 C 0.04 2.01 2.14 -52.92 -0.11 1.89 16 12 C -0.52 -27.01 9.03 25.60 0.23 -26.78 16 13 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 14 C 0.04 1.81 5.31 84.66 0.45 2.26 16 15 N -0.87 -43.68 10.73 21.45 0.23 -43.45 16 16 Si 0.95 40.30 29.54 68.60 2.03 42.33 16 17 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 C -0.19 -9.12 8.20 30.60 0.25 -8.86 16 21 C -0.21 -9.06 9.58 30.60 0.29 -8.76 16 22 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 23 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.21 4.58 8.06 -2.91 -0.02 4.56 16 26 H 0.21 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.15 6.41 4.29 -2.39 -0.01 6.40 16 28 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.27 12.68 8.32 -92.71 -0.77 11.91 16 30 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.06 2.80 4.84 -2.39 -0.01 2.79 16 32 H 0.09 3.42 5.76 -2.39 -0.01 3.40 16 33 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -68.99 284.27 1.54 -67.44 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.13 Total: 22.01 kcal Atomic # 6 Polarization: -65.33 SS G_CDS: 5.64 Total: -59.69 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.02 Total: -77.43 kcal Atomic # 8 Polarization: -78.66 SS G_CDS: -3.93 Total: -82.59 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 88.24 SS G_CDS: -0.30 Total: 87.94 kcal Total: -68.99 1.54 -67.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594889523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.435 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds