Wall clock time and date at job start Mon Mar 30 2020 01:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33420 * 125.15010 * 2 1 4 4 C 1.38773 * 114.87591 * 180.20664 * 3 2 1 5 5 N 1.40781 * 122.61112 * 179.76003 * 4 3 2 6 6 C 1.46506 * 119.99750 * 359.70864 * 5 4 3 7 7 C 1.52999 * 109.46684 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46997 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31522 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46921 * 60.00420 * 13 11 9 15 15 H 1.48506 * 109.46938 * 180.02562 * 13 11 9 16 16 H 1.48490 * 109.47056 * 300.00305 * 13 11 9 17 17 C 1.33750 * 114.77863 * 359.49007 * 4 3 2 18 18 N 1.48080 * 125.19569 * 180.28736 * 17 4 3 19 19 O 1.21795 * 119.99819 * 0.02562 * 18 17 4 20 20 O 1.21797 * 119.99763 * 179.97438 * 18 17 4 21 21 S 1.75851 * 125.15422 * 179.68419 * 2 1 3 22 22 H 1.09001 * 109.46769 * 180.33921 * 1 2 3 23 23 H 1.08994 * 109.47261 * 300.33932 * 1 2 3 24 24 H 1.08999 * 109.47152 * 60.34044 * 1 2 3 25 25 H 1.07991 * 122.56486 * 359.96586 * 3 2 1 26 26 H 0.96995 * 120.00142 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47212 * 300.00214 * 6 5 4 28 28 H 1.09001 * 109.46577 * 60.00289 * 6 5 4 29 29 H 1.09000 * 109.47486 * 300.00065 * 7 6 5 30 30 H 1.09001 * 109.47362 * 60.00788 * 7 6 5 31 31 H 1.09000 * 109.46866 * 300.00212 * 8 7 6 32 32 H 1.08996 * 109.47261 * 59.99820 * 8 7 6 33 33 H 0.96992 * 120.00032 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2752 1.0909 0.0000 4 6 3.6406 0.8434 -0.0045 5 7 4.5987 1.8749 -0.0102 6 6 4.1675 3.2751 -0.0179 7 6 5.3960 4.1869 -0.0222 8 6 4.9457 5.6492 -0.0297 9 6 6.1557 6.5475 -0.0346 10 1 7.1468 6.1183 -0.0330 11 6 5.9975 7.9171 -0.0421 12 7 4.7906 8.4397 -0.0445 13 14 7.4974 9.0305 -0.0475 14 1 8.3127 8.7569 -1.2582 15 1 7.0603 10.4497 -0.0548 16 1 8.3116 8.7700 1.1667 17 6 3.9757 -0.4515 0.0026 18 7 5.3610 -0.9746 0.0059 19 8 6.3033 -0.2030 0.0025 20 8 5.5579 -2.1765 0.0129 21 16 2.5196 -1.4377 0.0079 22 1 -0.3633 -1.0277 0.0061 23 1 -0.3633 0.5191 0.8869 24 1 -0.3633 0.5085 -0.8930 25 1 1.8656 2.0902 -0.0005 26 1 5.5442 1.6586 -0.0129 27 1 3.5694 3.4662 -0.9090 28 1 3.5695 3.4759 0.8710 29 1 5.9936 3.9957 0.8690 30 1 5.9944 3.9862 -0.9110 31 1 4.3478 5.8407 -0.9207 32 1 4.3475 5.8497 0.8592 33 1 4.6794 9.4032 -0.0495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596106474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:16 Heat of formation + Delta-G solvation = 9.609552 kcal Electronic energy + Delta-G solvation = -17679.961888 eV Core-core repulsion = 14642.024202 eV Total energy + Delta-G solvation = -3037.937686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85775 -39.34750 -36.36265 -35.79877 -33.72461 -32.40714 -30.60292 -28.70971 -26.75474 -24.67568 -23.06404 -22.76272 -20.50779 -20.45677 -18.99553 -17.90984 -17.40728 -17.04024 -16.29960 -15.71861 -15.21294 -14.90929 -14.51587 -14.37847 -14.04581 -13.11852 -12.94261 -12.68388 -12.33838 -11.99651 -11.98565 -11.42665 -11.28007 -11.09097 -11.06211 -10.95724 -10.81523 -10.65376 -10.19721 -9.83743 -9.59086 -9.31815 -9.24547 -8.44549 -7.79735 -6.09981 -4.12938 -0.12946 0.68716 1.20266 1.35232 1.84099 2.33264 3.22824 3.29002 3.33300 3.36636 4.18444 4.39240 4.54846 4.74957 5.05117 5.05170 5.26429 5.29923 5.43916 5.45077 5.48478 5.64920 5.84063 6.32409 6.39502 6.49169 6.83245 6.86206 7.44223 7.50707 7.61492 7.82114 7.87788 8.29106 8.92987 9.52093 11.01284 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.003705 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.819209 B = 7555.557192 C = 8590.325064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.096 4.096 3 C -0.193 4.193 4 C 0.306 3.694 5 N -0.691 5.691 6 C 0.108 3.892 7 C -0.123 4.123 8 C 0.027 3.973 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.295 4.295 18 N 0.095 4.905 19 O -0.200 6.200 20 O -0.188 6.188 21 S 0.195 5.805 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.421 0.579 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 -17.451 0.087 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.217 4.217 3 C -0.227 4.227 4 C 0.179 3.821 5 N -0.322 5.322 6 C -0.015 4.015 7 C -0.161 4.161 8 C -0.011 4.011 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.506 4.506 18 N 0.600 4.400 19 O -0.401 6.401 20 O -0.395 6.395 21 S 0.453 5.547 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.182 0.818 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.723 -18.347 0.094 21.773 hybrid contribution 1.882 2.059 -0.018 2.790 sum -9.841 -16.288 0.077 19.030 Atomic orbital electron populations 1.20565 0.86090 1.03970 1.04441 1.24918 1.00984 0.96159 0.99616 1.19721 0.89692 1.01574 1.11751 1.16931 0.90990 0.86254 0.87921 1.46102 1.08560 1.04351 1.73220 1.21996 1.00020 0.77838 1.01613 1.21913 0.94938 0.97564 1.01689 1.19019 0.97047 0.87482 0.97538 1.21158 0.92827 0.91118 1.51167 0.92553 1.25008 0.95922 0.98301 0.95071 1.69940 1.21131 1.11865 1.50507 0.86620 0.82966 0.79486 0.78751 1.20149 1.21227 1.20154 1.24607 0.87065 0.96532 1.42389 1.42152 1.00768 1.00403 0.96715 1.94408 1.33691 1.55108 1.56849 1.94511 1.91127 0.98002 1.55907 1.84339 0.89566 1.04333 1.76430 0.90490 0.89051 0.89050 0.81811 0.73699 0.91377 0.91360 0.92241 0.92249 0.96278 0.96269 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.37 36.01 0.37 -0.07 16 2 C -0.10 -0.83 6.51 -35.99 -0.23 -1.06 16 3 C -0.19 -2.04 9.33 -41.07 -0.38 -2.42 16 4 C 0.31 4.15 6.59 -85.12 -0.56 3.59 16 5 N -0.69 -10.21 5.73 -59.68 -0.34 -10.55 16 6 C 0.11 1.64 5.13 -4.04 -0.02 1.62 16 7 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 8 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 9 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 10 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.30 -4.23 7.52 -11.17 -0.08 -4.31 16 18 N 0.10 1.59 4.46 33.51 0.15 1.74 16 19 O -0.20 -3.51 16.55 -29.46 -0.49 -4.00 16 20 O -0.19 -3.20 19.08 -29.46 -0.56 -3.76 16 21 S 0.20 2.04 23.12 -107.50 -2.49 -0.45 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.16 1.50 7.38 -52.49 -0.39 1.11 16 26 H 0.42 6.59 5.82 -40.82 -0.24 6.35 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -30.91 305.84 -8.97 -39.88 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.97 Total: -0.64 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.60 Total: -17.76 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.54 Total: -34.10 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -1.05 Total: -7.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.91 -8.97 -39.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.489 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds