Wall clock time and date at job start Mon Mar 30 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33420 * 125.15010 * 2 1 4 4 C 1.38773 * 114.87591 * 180.20664 * 3 2 1 5 5 N 1.40781 * 122.61112 * 179.76003 * 4 3 2 6 6 C 1.46506 * 119.99750 * 359.70864 * 5 4 3 7 7 C 1.52999 * 109.46684 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46997 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31522 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46921 * 60.00420 * 13 11 9 15 15 H 1.48506 * 109.46938 * 180.02562 * 13 11 9 16 16 H 1.48490 * 109.47056 * 300.00305 * 13 11 9 17 17 C 1.33750 * 114.77863 * 359.49007 * 4 3 2 18 18 N 1.48080 * 125.19569 * 180.28736 * 17 4 3 19 19 O 1.21795 * 119.99819 * 0.02562 * 18 17 4 20 20 O 1.21797 * 119.99763 * 179.97438 * 18 17 4 21 21 S 1.75851 * 125.15422 * 179.68419 * 2 1 3 22 22 H 1.09001 * 109.46769 * 180.33921 * 1 2 3 23 23 H 1.08994 * 109.47261 * 300.33932 * 1 2 3 24 24 H 1.08999 * 109.47152 * 60.34044 * 1 2 3 25 25 H 1.07991 * 122.56486 * 359.96586 * 3 2 1 26 26 H 0.96995 * 120.00142 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47212 * 300.00214 * 6 5 4 28 28 H 1.09001 * 109.46577 * 60.00289 * 6 5 4 29 29 H 1.09000 * 109.47486 * 300.00065 * 7 6 5 30 30 H 1.09001 * 109.47362 * 60.00788 * 7 6 5 31 31 H 1.09000 * 109.46866 * 300.00212 * 8 7 6 32 32 H 1.08996 * 109.47261 * 59.99820 * 8 7 6 33 33 H 0.96992 * 120.00032 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2752 1.0909 0.0000 4 6 3.6406 0.8434 -0.0045 5 7 4.5987 1.8749 -0.0102 6 6 4.1675 3.2751 -0.0179 7 6 5.3960 4.1869 -0.0222 8 6 4.9457 5.6492 -0.0297 9 6 6.1557 6.5475 -0.0346 10 1 7.1468 6.1183 -0.0330 11 6 5.9975 7.9171 -0.0421 12 7 4.7906 8.4397 -0.0445 13 14 7.4974 9.0305 -0.0475 14 1 8.3127 8.7569 -1.2582 15 1 7.0603 10.4497 -0.0548 16 1 8.3116 8.7700 1.1667 17 6 3.9757 -0.4515 0.0026 18 7 5.3610 -0.9746 0.0059 19 8 6.3033 -0.2030 0.0025 20 8 5.5579 -2.1765 0.0129 21 16 2.5196 -1.4377 0.0079 22 1 -0.3633 -1.0277 0.0061 23 1 -0.3633 0.5191 0.8869 24 1 -0.3633 0.5085 -0.8930 25 1 1.8656 2.0902 -0.0005 26 1 5.5442 1.6586 -0.0129 27 1 3.5694 3.4662 -0.9090 28 1 3.5695 3.4759 0.8710 29 1 5.9936 3.9957 0.8690 30 1 5.9944 3.9862 -0.9110 31 1 4.3478 5.8407 -0.9207 32 1 4.3475 5.8497 0.8592 33 1 4.6794 9.4032 -0.0495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596106474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:15 Heat of formation + Delta-G solvation = -8.158781 kcal Electronic energy + Delta-G solvation = -17680.732381 eV Core-core repulsion = 14642.024202 eV Total energy + Delta-G solvation = -3038.708179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.06478 -40.34473 -37.59362 -37.09617 -35.32070 -33.76581 -32.06918 -29.55235 -28.40285 -25.96077 -24.57820 -23.69444 -22.14306 -21.49907 -20.16294 -18.99054 -18.62281 -18.59793 -17.81382 -16.73356 -16.51037 -16.46254 -15.97232 -15.22626 -14.83618 -14.34417 -14.10696 -13.82137 -13.57297 -13.28560 -13.25647 -12.76158 -12.74726 -12.59359 -12.47092 -12.37245 -12.27546 -11.96072 -11.78868 -11.51342 -11.24214 -10.94706 -10.55975 -10.20132 -8.80298 -8.22351 -6.32271 -1.18280 -0.23260 0.13091 0.43443 0.81658 1.38085 1.40567 1.42027 1.50044 2.10531 2.40709 3.11863 3.46041 3.54387 3.97573 4.12489 4.17194 4.36473 4.47816 4.75675 4.76180 4.83180 4.86370 4.92589 5.09133 5.20099 5.22431 5.47381 5.67995 5.69223 5.81461 6.21663 6.23283 6.53498 6.83164 7.36947 8.88876 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.003705 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.819209 B = 7555.557192 C = 8590.325064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.058 4.058 3 C -0.217 4.217 4 C 0.304 3.696 5 N -0.698 5.698 6 C 0.123 3.877 7 C -0.111 4.111 8 C 0.031 3.969 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.270 1.270 17 C -0.323 4.323 18 N 0.096 4.904 19 O -0.236 6.236 20 O -0.206 6.206 21 S 0.219 5.781 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.182 0.818 26 H 0.415 0.585 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 -17.802 0.089 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.180 4.180 3 C -0.250 4.250 4 C 0.177 3.823 5 N -0.329 5.329 6 C 0.000 4.000 7 C -0.149 4.149 8 C -0.007 4.007 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.534 4.534 18 N 0.592 4.408 19 O -0.430 6.430 20 O -0.411 6.411 21 S 0.476 5.524 22 H 0.113 0.887 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.199 0.801 26 H 0.256 0.744 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.443 -18.719 0.096 23.046 hybrid contribution 2.251 2.124 -0.019 3.095 sum -11.192 -16.596 0.077 20.017 Atomic orbital electron populations 1.20852 0.82781 1.05732 1.06048 1.25483 1.02649 0.94502 0.95325 1.19880 0.88261 1.03081 1.13761 1.17322 0.92004 0.85561 0.87400 1.45998 1.08671 1.04442 1.73828 1.21726 0.98044 0.77481 1.02755 1.21635 0.96506 0.95362 1.01384 1.18887 0.95646 0.90324 0.95852 1.21640 0.93902 0.92137 1.50934 0.92573 1.25860 0.98816 0.99912 0.94685 1.70048 1.23101 1.12272 1.51394 0.85592 0.79442 0.77542 0.79041 1.19449 1.20664 1.19461 1.25045 0.86619 0.97931 1.43781 1.42457 1.01764 1.00197 0.96421 1.94387 1.35058 1.55037 1.58473 1.94473 1.91658 0.98452 1.56532 1.84312 0.87572 1.04533 1.75951 0.88737 0.87189 0.87191 0.80131 0.74447 0.90234 0.90216 0.92571 0.92573 0.97874 0.97863 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.37 71.24 0.74 0.27 16 2 C -0.06 -0.80 6.51 24.60 0.16 -0.64 16 3 C -0.22 -4.01 9.33 21.31 0.20 -3.81 16 4 C 0.30 7.92 6.59 36.81 0.24 8.16 16 5 N -0.70 -20.38 5.73 -342.73 -1.96 -22.35 16 6 C 0.12 3.62 5.13 86.38 0.44 4.06 16 7 C -0.11 -4.21 5.27 30.60 0.16 -4.05 16 8 C 0.03 1.49 4.97 29.85 0.15 1.64 16 9 C -0.55 -30.25 9.11 25.60 0.23 -30.02 16 10 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 11 C 0.01 0.32 5.46 84.65 0.46 0.78 16 12 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 13 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C -0.32 -9.07 7.52 80.89 0.61 -8.46 16 18 N 0.10 3.28 4.46 -47.91 -0.21 3.07 16 19 O -0.24 -8.67 16.55 18.89 0.31 -8.36 16 20 O -0.21 -7.22 19.08 18.89 0.36 -6.86 16 21 S 0.22 4.10 23.12 -56.49 -1.31 2.80 16 22 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 23 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.18 2.72 7.38 -2.91 -0.02 2.70 16 26 H 0.41 13.25 5.82 -92.71 -0.54 12.71 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 33 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.95 305.84 3.49 -64.46 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.59 Total: 7.86 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 3.40 Total: -32.07 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.89 Total: -73.30 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.67 Total: -15.21 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.31 Total: 2.80 kcal Total: -67.95 3.49 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.301 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds