Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47039 * 2 1 4 4 C 1.34944 * 117.00067 * 180.02562 * 3 2 1 5 5 O 1.21687 * 120.00004 * 359.97438 * 4 3 2 6 6 C 1.41738 * 120.00253 * 179.97438 * 4 3 2 7 7 C 1.36833 * 126.11601 * 179.97438 * 6 4 3 8 8 N 1.30814 * 114.01409 * 179.97438 * 7 6 4 9 9 C 1.30272 * 117.27595 * 0.02562 * 8 7 6 10 10 N 1.37800 * 124.73975 * 179.97438 * 9 8 7 11 11 C 1.46500 * 119.99978 * 0.02894 * 10 9 8 12 12 H 1.09000 * 109.47381 * 34.99745 * 11 10 9 13 13 C 1.53002 * 109.46766 * 274.99571 * 11 10 9 14 14 C 1.50706 * 109.47187 * 154.99990 * 11 10 9 15 15 H 1.07998 * 119.99629 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99955 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99932 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47364 * 119.99503 * 18 16 14 21 21 H 1.48500 * 109.46997 * 239.99827 * 18 16 14 22 22 S 1.70912 * 110.51602 * 0.26450 * 9 8 7 23 23 H 1.09006 * 109.46795 * 299.99932 * 1 2 3 24 24 H 1.08992 * 109.47169 * 59.99675 * 1 2 3 25 25 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46795 * 240.00068 * 2 1 3 27 27 H 1.08992 * 109.47169 * 120.00325 * 2 1 3 28 28 H 1.07994 * 122.99372 * 0.02562 * 7 6 4 29 29 H 0.96998 * 120.00144 * 180.02562 * 10 9 8 30 30 H 1.09004 * 109.47059 * 299.99762 * 13 11 10 31 31 H 1.08992 * 109.47060 * 60.00246 * 13 11 10 32 32 H 1.09004 * 109.46930 * 180.02562 * 13 11 10 33 33 H 0.97003 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0855 0.5591 -0.0005 6 6 3.8859 2.8338 -0.0011 7 6 5.2157 3.1566 -0.0012 8 7 5.4511 4.4434 -0.0023 9 6 4.4196 5.2391 -0.0027 10 7 4.4895 6.6153 -0.0033 11 6 5.7938 7.2825 -0.0043 12 1 6.5004 6.6983 -0.5938 13 6 6.3057 7.4035 1.4325 14 6 5.6542 8.6575 -0.6053 15 1 4.6905 8.9998 -0.9522 16 6 6.7571 9.4778 -0.7132 17 7 7.9307 9.0607 -0.2911 18 14 6.5842 11.1818 -1.4588 19 1 5.1706 11.4086 -1.8531 20 1 6.9897 12.2029 -0.4596 21 1 7.4550 11.2885 -2.6569 22 16 2.9677 4.3375 0.0059 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 6.0008 2.4151 -0.0012 29 1 3.6752 7.1423 -0.0032 30 1 5.5991 7.9878 2.0219 31 1 6.4066 6.4092 1.8671 32 1 7.2759 7.9004 1.4318 33 1 8.7065 9.6381 -0.3667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596107489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -47.677585 kcal Electronic energy + Delta-G solvation = -17738.203450 eV Core-core repulsion = 14697.781608 eV Total energy + Delta-G solvation = -3040.421842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37778 -39.23860 -36.61511 -35.94174 -32.98992 -31.86815 -30.04509 -28.82001 -25.56065 -24.90907 -23.52527 -22.14519 -21.05444 -19.23693 -18.79098 -17.51195 -16.58549 -16.54072 -16.15553 -15.26122 -15.03394 -14.65447 -14.03697 -13.91217 -13.73898 -13.12605 -12.90617 -12.67291 -12.18546 -11.96875 -11.70001 -11.31608 -11.20163 -11.18057 -10.95140 -10.54629 -10.47124 -10.42451 -10.33952 -9.77132 -9.23237 -9.20026 -9.05245 -8.64515 -7.24725 -6.29055 -4.40121 0.73055 1.35463 1.99690 2.71328 2.94138 3.14895 3.23321 3.25510 3.48397 3.74434 4.22024 4.82906 4.87202 4.99250 5.04408 5.14759 5.19587 5.50290 5.64560 5.75235 5.84891 6.21918 6.55631 6.57952 6.80917 6.88213 7.05577 7.40394 7.45943 7.67616 7.94189 7.97645 7.99662 8.36184 8.65978 9.27429 10.76656 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046919 B = 0.003705 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.633941 B = 7555.443232 C = 7898.923604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.357 6.357 4 C 0.561 3.439 5 O -0.527 6.527 6 C -0.387 4.387 7 C 0.226 3.774 8 N -0.561 5.561 9 C 0.358 3.642 10 N -0.638 5.638 11 C 0.267 3.733 12 H 0.060 0.940 13 C -0.148 4.148 14 C -0.542 4.542 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.879 5.879 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.281 1.281 22 S 0.110 5.890 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.184 0.816 29 H 0.409 0.591 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.095 0.905 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 -10.867 1.201 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.410 3.590 5 O -0.420 6.420 6 C -0.513 4.513 7 C 0.061 3.939 8 N -0.286 5.286 9 C -0.012 4.012 10 N -0.266 5.266 11 C 0.164 3.836 12 H 0.078 0.922 13 C -0.207 4.207 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.516 5.516 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 S 0.359 5.641 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.201 0.799 29 H 0.246 0.754 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.114 0.886 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.695 -10.324 1.223 15.648 hybrid contribution 0.393 0.348 -0.366 0.640 sum -11.302 -9.976 0.856 15.099 Atomic orbital electron populations 1.21802 0.92877 1.02677 1.03479 1.22545 0.95128 0.81163 1.02276 1.86201 1.24402 1.31672 1.85135 1.18018 0.80186 0.88000 0.72840 1.90861 1.60056 1.41779 1.49261 1.22837 0.96708 0.94321 1.37398 1.22271 0.93431 0.91202 0.87023 1.66415 1.30361 1.02540 1.29294 1.24347 0.92599 0.91966 0.92286 1.45462 1.13005 0.98753 1.69386 1.19145 0.77646 0.92033 0.94741 0.92222 1.22117 1.03590 0.98259 0.96718 1.21183 0.95804 0.98864 1.42239 0.91789 1.24862 0.94887 0.98766 0.94904 1.69896 0.99477 1.36971 1.45268 0.86330 0.78368 0.83147 0.78914 1.19649 1.20710 1.20708 1.83851 1.08224 0.96970 1.75034 0.91550 0.91545 0.90508 0.91689 0.91697 0.79911 0.75426 0.95271 0.96198 0.88623 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.70 6.10 37.16 0.23 0.93 16 3 O -0.36 -5.11 9.91 -41.16 -0.41 -5.52 16 4 C 0.56 9.18 7.73 32.07 0.25 9.42 16 5 O -0.53 -9.44 16.55 -19.41 -0.32 -9.76 16 6 C -0.39 -6.42 6.32 -38.75 -0.25 -6.67 16 7 C 0.23 3.88 11.08 -18.49 -0.20 3.68 16 8 N -0.56 -10.94 9.81 -14.76 -0.14 -11.08 16 9 C 0.36 6.59 8.01 -87.99 -0.71 5.89 16 10 N -0.64 -12.26 5.19 -57.02 -0.30 -12.56 16 11 C 0.27 6.23 2.68 -69.08 -0.18 6.04 16 12 H 0.06 1.58 7.74 -51.93 -0.40 1.18 16 13 C -0.15 -3.40 9.27 37.16 0.34 -3.05 16 14 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -23.44 11.32 55.43 0.63 -22.81 16 18 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 S 0.11 1.69 22.99 -107.50 -2.47 -0.78 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.18 2.75 8.04 -52.49 -0.42 2.33 16 29 H 0.41 6.85 8.66 -40.82 -0.35 6.49 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -28.19 305.64 -7.95 -36.15 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.99 Total: 3.72 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.53 Total: 3.33 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.19 Total: -46.46 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.73 Total: -15.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.19 -7.95 -36.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds