Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47039 * 2 1 4 4 C 1.34944 * 117.00067 * 180.02562 * 3 2 1 5 5 O 1.21687 * 120.00004 * 359.97438 * 4 3 2 6 6 C 1.41738 * 120.00253 * 179.97438 * 4 3 2 7 7 C 1.36833 * 126.11601 * 179.97438 * 6 4 3 8 8 N 1.30814 * 114.01409 * 179.97438 * 7 6 4 9 9 C 1.30272 * 117.27595 * 0.02562 * 8 7 6 10 10 N 1.37800 * 124.73975 * 179.97438 * 9 8 7 11 11 C 1.46500 * 119.99978 * 0.02894 * 10 9 8 12 12 H 1.09000 * 109.47381 * 34.99745 * 11 10 9 13 13 C 1.53002 * 109.46766 * 274.99571 * 11 10 9 14 14 C 1.50706 * 109.47187 * 154.99990 * 11 10 9 15 15 H 1.07998 * 119.99629 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99955 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99932 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47364 * 119.99503 * 18 16 14 21 21 H 1.48500 * 109.46997 * 239.99827 * 18 16 14 22 22 S 1.70912 * 110.51602 * 0.26450 * 9 8 7 23 23 H 1.09006 * 109.46795 * 299.99932 * 1 2 3 24 24 H 1.08992 * 109.47169 * 59.99675 * 1 2 3 25 25 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46795 * 240.00068 * 2 1 3 27 27 H 1.08992 * 109.47169 * 120.00325 * 2 1 3 28 28 H 1.07994 * 122.99372 * 0.02562 * 7 6 4 29 29 H 0.96998 * 120.00144 * 180.02562 * 10 9 8 30 30 H 1.09004 * 109.47059 * 299.99762 * 13 11 10 31 31 H 1.08992 * 109.47060 * 60.00246 * 13 11 10 32 32 H 1.09004 * 109.46930 * 180.02562 * 13 11 10 33 33 H 0.97003 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0855 0.5591 -0.0005 6 6 3.8859 2.8338 -0.0011 7 6 5.2157 3.1566 -0.0012 8 7 5.4511 4.4434 -0.0023 9 6 4.4196 5.2391 -0.0027 10 7 4.4895 6.6153 -0.0033 11 6 5.7938 7.2825 -0.0043 12 1 6.5004 6.6983 -0.5938 13 6 6.3057 7.4035 1.4325 14 6 5.6542 8.6575 -0.6053 15 1 4.6905 8.9998 -0.9522 16 6 6.7571 9.4778 -0.7132 17 7 7.9307 9.0607 -0.2911 18 14 6.5842 11.1818 -1.4588 19 1 5.1706 11.4086 -1.8531 20 1 6.9897 12.2029 -0.4596 21 1 7.4550 11.2885 -2.6569 22 16 2.9677 4.3375 0.0059 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 6.0008 2.4151 -0.0012 29 1 3.6752 7.1423 -0.0032 30 1 5.5991 7.9878 2.0219 31 1 6.4066 6.4092 1.8671 32 1 7.2759 7.9004 1.4318 33 1 8.7065 9.6381 -0.3667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596107489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -63.910982 kcal Electronic energy + Delta-G solvation = -17738.907383 eV Core-core repulsion = 14697.781608 eV Total energy + Delta-G solvation = -3041.125775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63672 -40.62081 -37.96547 -37.43484 -34.77556 -32.78443 -31.59171 -30.34568 -27.40945 -26.33303 -24.68888 -23.38493 -22.55483 -20.60678 -20.25696 -18.98460 -18.00287 -17.69499 -17.64384 -16.83259 -16.62419 -16.02418 -15.49875 -15.15980 -14.97585 -14.51197 -14.39764 -13.85400 -13.59508 -13.11318 -12.98197 -12.90989 -12.75225 -12.59478 -12.39168 -12.33062 -12.14028 -11.73631 -11.46864 -11.36182 -11.05169 -10.66628 -10.51646 -10.38344 -8.68897 -8.20606 -6.38116 -0.63715 -0.00851 0.65516 1.36325 1.44102 1.46553 1.57071 1.81540 2.12445 2.28128 2.47334 3.10934 3.57123 4.02318 4.04972 4.14913 4.29216 4.39680 4.69229 4.83669 4.89734 4.95682 4.99257 5.05300 5.16342 5.33492 5.45166 5.55850 5.71794 5.90647 6.09597 6.34136 6.68304 6.73399 7.02703 7.33705 8.85066 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046919 B = 0.003705 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.633941 B = 7555.443232 C = 7898.923604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.563 3.437 5 O -0.545 6.545 6 C -0.394 4.394 7 C 0.215 3.785 8 N -0.592 5.592 9 C 0.333 3.667 10 N -0.644 5.644 11 C 0.280 3.720 12 H 0.020 0.980 13 C -0.135 4.135 14 C -0.552 4.552 15 H 0.073 0.927 16 C 0.021 3.979 17 N -0.912 5.912 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.284 1.284 22 S 0.194 5.806 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.421 0.579 30 H 0.037 0.963 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 -11.186 1.025 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.412 3.588 5 O -0.439 6.439 6 C -0.519 4.519 7 C 0.051 3.949 8 N -0.318 5.318 9 C -0.036 4.036 10 N -0.275 5.275 11 C 0.175 3.825 12 H 0.038 0.962 13 C -0.194 4.194 14 C -0.591 4.591 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.550 5.550 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.210 1.210 22 S 0.444 5.556 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.213 0.787 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.104 -10.678 1.049 17.721 hybrid contribution 1.011 0.235 -0.309 1.082 sum -13.093 -10.443 0.740 16.764 Atomic orbital electron populations 1.21828 0.90221 1.04441 1.03650 1.22923 0.97174 0.79546 1.02497 1.86192 1.22927 1.33816 1.84551 1.17990 0.80882 0.87553 0.72405 1.90850 1.60733 1.42338 1.49966 1.23149 0.97112 0.95557 1.36088 1.22433 0.94294 0.90726 0.87468 1.66410 1.32101 1.03636 1.29697 1.24498 0.94320 0.91690 0.93056 1.44973 1.11926 0.99267 1.71351 1.18631 0.78846 0.91178 0.93862 0.96247 1.21928 1.02410 0.98035 0.97011 1.21538 0.96157 0.99480 1.41879 0.90881 1.25690 0.94632 1.02334 0.95360 1.70031 1.00178 1.38257 1.46501 0.85334 0.78613 0.78813 0.77809 1.18522 1.20502 1.21022 1.83516 1.04749 0.94422 1.72880 0.91331 0.91374 0.87966 0.91548 0.91502 0.78692 0.74045 0.94393 0.96085 0.91165 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 1.05 6.10 71.98 0.44 1.48 16 3 O -0.36 -9.49 9.91 -58.60 -0.58 -10.07 16 4 C 0.56 17.55 7.73 68.69 0.53 18.08 16 5 O -0.55 -18.94 16.55 19.22 0.32 -18.62 16 6 C -0.39 -12.51 6.32 22.81 0.14 -12.36 16 7 C 0.22 7.31 11.08 84.51 0.94 8.24 16 8 N -0.59 -23.22 9.81 -200.60 -1.97 -25.19 16 9 C 0.33 12.05 8.01 179.43 1.44 13.49 16 10 N -0.64 -24.54 5.19 -334.31 -1.73 -26.28 16 11 C 0.28 13.25 2.68 44.25 0.12 13.37 16 12 H 0.02 1.08 7.74 -2.39 -0.02 1.06 16 13 C -0.13 -6.30 9.27 71.98 0.67 -5.64 16 14 C -0.55 -27.45 8.73 25.60 0.22 -27.22 16 15 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.02 1.06 5.30 84.65 0.45 1.51 16 17 N -0.91 -49.63 11.32 21.45 0.24 -49.39 16 18 Si 0.97 40.28 29.54 68.60 2.03 42.30 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 20 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 S 0.19 5.54 22.99 -56.49 -1.30 4.24 16 23 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.31 8.13 -2.38 -0.02 1.29 16 27 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.20 5.87 8.04 -2.91 -0.02 5.85 16 29 H 0.42 13.63 8.66 -92.71 -0.80 12.82 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 3.65 6.07 -2.38 -0.01 3.64 16 33 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -60.27 305.64 3.02 -57.24 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.33 Total: 15.92 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.69 Total: 9.84 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -3.46 Total: -100.86 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.26 Total: -28.69 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.30 Total: 4.24 kcal Total: -60.27 3.02 -57.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.666 kcal (2) G-P(sol) polarization free energy of solvation -60.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds