Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46778 * 2 1 4 4 C 1.34954 * 116.99512 * 179.97438 * 3 2 1 5 5 O 1.21681 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.41735 * 119.99881 * 179.97438 * 4 3 2 7 7 C 1.36829 * 126.11556 * 180.02562 * 6 4 3 8 8 N 1.30822 * 114.01168 * 180.02562 * 7 6 4 9 9 C 1.30261 * 117.27778 * 0.02562 * 8 7 6 10 10 N 1.37805 * 124.73964 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00122 * 359.97438 * 10 9 8 12 12 H 1.09002 * 109.47310 * 325.00152 * 11 10 9 13 13 C 1.53000 * 109.47003 * 84.99767 * 11 10 9 14 14 C 1.50696 * 109.47189 * 204.99736 * 11 10 9 15 15 H 1.08000 * 119.99876 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00102 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00421 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99818 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.46760 * 90.00017 * 18 16 14 20 20 H 1.48507 * 109.47013 * 209.99457 * 18 16 14 21 21 H 1.48496 * 109.47306 * 329.99769 * 18 16 14 22 22 S 1.70915 * 110.52101 * 359.97438 * 9 8 7 23 23 H 1.08998 * 109.47184 * 60.00644 * 1 2 3 24 24 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47369 * 300.00712 * 1 2 3 26 26 H 1.08991 * 109.47191 * 239.99705 * 2 1 3 27 27 H 1.08998 * 109.46714 * 119.99605 * 2 1 3 28 28 H 1.07997 * 122.99386 * 359.97438 * 7 6 4 29 29 H 0.97004 * 119.99857 * 179.97438 * 10 9 8 30 30 H 1.09000 * 109.47195 * 300.00087 * 13 11 10 31 31 H 1.09005 * 109.47431 * 60.00397 * 13 11 10 32 32 H 1.09003 * 109.46943 * 180.02562 * 13 11 10 33 33 H 0.96996 * 120.00276 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0854 0.5591 0.0005 6 6 3.8859 2.8338 0.0000 7 6 5.2156 3.1566 0.0000 8 7 5.4510 4.4435 0.0000 9 6 4.4196 5.2391 0.0006 10 7 4.4895 6.6153 0.0001 11 6 5.7937 7.2826 -0.0004 12 1 6.5008 6.6988 0.5889 13 6 6.3045 7.4025 -1.4377 14 6 5.6545 8.6579 0.5996 15 1 4.6911 9.0005 0.9470 16 6 6.7574 9.4784 0.7060 17 7 6.6362 10.6785 1.2301 18 14 8.4240 8.8855 0.1056 19 1 8.5960 9.2553 -1.3223 20 1 9.4959 9.5205 0.9139 21 1 8.5051 7.4096 0.2480 22 16 2.9676 4.3376 0.0004 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 6.0008 2.4151 0.0007 29 1 3.6751 7.1423 0.0002 30 1 6.4051 6.4077 -1.8717 31 1 5.5975 7.9863 -2.0271 32 1 7.2751 7.8986 -1.4380 33 1 7.4120 11.2559 1.3046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596107498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = -38.836874 kcal Electronic energy + Delta-G solvation = -17813.106833 eV Core-core repulsion = 14773.068352 eV Total energy + Delta-G solvation = -3040.038480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47088 -39.38531 -36.74743 -36.13628 -32.92440 -31.93281 -30.66323 -29.27670 -25.60327 -24.95549 -23.64081 -22.26868 -21.16343 -19.33811 -18.91943 -17.61596 -16.65646 -16.61662 -16.44175 -15.56457 -15.17340 -14.71223 -14.15775 -13.98160 -13.78563 -13.29401 -13.10747 -12.95351 -12.36189 -12.21697 -12.03135 -11.76186 -11.62484 -11.29092 -10.94328 -10.53335 -10.52283 -10.39113 -10.02096 -9.75309 -9.42370 -9.33855 -9.18340 -8.82279 -7.41508 -6.35146 -4.40622 0.60457 1.22108 1.87718 2.59574 2.86101 3.13601 3.26680 3.28568 3.35337 3.58725 4.18440 4.78416 4.79977 4.83373 4.99045 5.09068 5.13290 5.39493 5.60360 5.68027 5.80089 6.01129 6.11376 6.25867 6.34841 6.48272 6.59519 6.90210 7.21626 7.26392 7.55836 7.89327 8.16280 8.22245 8.61568 9.22558 10.76574 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046461 B = 0.003971 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.506631 B = 7048.613589 C = 7437.865367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.561 3.439 5 O -0.525 6.525 6 C -0.384 4.384 7 C 0.224 3.776 8 N -0.565 5.565 9 C 0.354 3.646 10 N -0.633 5.633 11 C 0.242 3.758 12 H 0.059 0.941 13 C -0.163 4.163 14 C -0.545 4.545 15 H 0.082 0.918 16 C 0.083 3.917 17 N -0.887 5.887 18 Si 0.885 3.115 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.260 1.260 22 S 0.127 5.873 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.185 0.815 29 H 0.415 0.585 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -15.342 -3.528 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.409 3.591 5 O -0.417 6.417 6 C -0.509 4.509 7 C 0.059 3.941 8 N -0.291 5.291 9 C -0.016 4.016 10 N -0.262 5.262 11 C 0.137 3.863 12 H 0.076 0.924 13 C -0.221 4.221 14 C -0.583 4.583 15 H 0.100 0.900 16 C -0.122 4.122 17 N -0.523 5.523 18 Si 0.714 3.286 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.184 1.184 22 S 0.377 5.623 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.202 0.798 29 H 0.253 0.747 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.526 -14.691 -3.463 17.848 hybrid contribution 1.324 -0.658 -0.308 1.510 sum -8.203 -15.348 -3.772 17.807 Atomic orbital electron populations 1.21804 0.92801 1.02735 1.03523 1.22559 0.95191 0.81041 1.02313 1.86204 1.24283 1.31798 1.85062 1.18007 0.80269 0.87959 0.72861 1.90865 1.60078 1.41753 1.49049 1.22904 0.96779 0.94536 1.36704 1.22245 0.93503 0.91096 0.87289 1.66398 1.30553 1.02696 1.29423 1.24312 0.92974 0.91815 0.92490 1.44992 1.12299 0.98719 1.70181 1.19431 0.79607 0.93654 0.93613 0.92364 1.22488 1.00773 0.99736 0.99128 1.20949 0.98015 0.96836 1.42463 0.89992 1.24796 0.98925 0.94413 0.94086 1.69848 1.31173 1.07986 1.43247 0.86878 0.83403 0.79952 0.78345 1.20140 1.21929 1.18418 1.83933 1.07526 0.96542 1.74327 0.91525 0.90463 0.91500 0.91661 0.91639 0.79821 0.74696 0.94166 0.92628 0.92927 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.67 6.10 37.16 0.23 0.89 16 3 O -0.36 -4.86 9.91 -41.19 -0.41 -5.27 16 4 C 0.56 8.72 7.73 32.07 0.25 8.97 16 5 O -0.53 -9.00 16.55 -19.41 -0.32 -9.32 16 6 C -0.38 -6.00 6.32 -38.76 -0.25 -6.24 16 7 C 0.22 3.58 11.08 -18.49 -0.20 3.37 16 8 N -0.56 -10.27 9.81 -14.75 -0.14 -10.41 16 9 C 0.35 6.11 8.01 -87.99 -0.71 5.41 16 10 N -0.63 -11.55 5.19 -57.03 -0.30 -11.85 16 11 C 0.24 5.28 2.27 -69.09 -0.16 5.12 16 12 H 0.06 1.38 6.80 -51.93 -0.35 1.03 16 13 C -0.16 -3.34 8.97 37.16 0.33 -3.01 16 14 C -0.54 -13.87 9.31 -34.44 -0.32 -14.19 16 15 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 17 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 18 Si 0.89 20.56 24.37 -169.99 -4.14 16.42 16 19 H -0.27 -6.19 6.87 56.52 0.39 -5.80 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.26 -5.90 6.53 56.52 0.37 -5.53 16 22 S 0.13 1.83 22.99 -107.50 -2.47 -0.64 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.18 2.55 8.04 -52.49 -0.42 2.13 16 29 H 0.42 6.72 8.66 -40.82 -0.35 6.36 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -29.44 298.82 -6.90 -36.34 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.86 Total: 3.03 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.54 Total: 1.69 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.33 Total: -46.74 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.73 Total: -14.59 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.14 Total: 16.42 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.47 Total: -0.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.44 -6.90 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.498 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds