Wall clock time and date at job start Mon Mar 30 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46778 * 2 1 4 4 C 1.34954 * 116.99512 * 179.97438 * 3 2 1 5 5 O 1.21681 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.41735 * 119.99881 * 179.97438 * 4 3 2 7 7 C 1.36829 * 126.11556 * 180.02562 * 6 4 3 8 8 N 1.30822 * 114.01168 * 180.02562 * 7 6 4 9 9 C 1.30261 * 117.27778 * 0.02562 * 8 7 6 10 10 N 1.37805 * 124.73964 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00122 * 359.97438 * 10 9 8 12 12 H 1.09002 * 109.47310 * 325.00152 * 11 10 9 13 13 C 1.53000 * 109.47003 * 84.99767 * 11 10 9 14 14 C 1.50696 * 109.47189 * 204.99736 * 11 10 9 15 15 H 1.08000 * 119.99876 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00102 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00421 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99818 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.46760 * 90.00017 * 18 16 14 20 20 H 1.48507 * 109.47013 * 209.99457 * 18 16 14 21 21 H 1.48496 * 109.47306 * 329.99769 * 18 16 14 22 22 S 1.70915 * 110.52101 * 359.97438 * 9 8 7 23 23 H 1.08998 * 109.47184 * 60.00644 * 1 2 3 24 24 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47369 * 300.00712 * 1 2 3 26 26 H 1.08991 * 109.47191 * 239.99705 * 2 1 3 27 27 H 1.08998 * 109.46714 * 119.99605 * 2 1 3 28 28 H 1.07997 * 122.99386 * 359.97438 * 7 6 4 29 29 H 0.97004 * 119.99857 * 179.97438 * 10 9 8 30 30 H 1.09000 * 109.47195 * 300.00087 * 13 11 10 31 31 H 1.09005 * 109.47431 * 60.00397 * 13 11 10 32 32 H 1.09003 * 109.46943 * 180.02562 * 13 11 10 33 33 H 0.96996 * 120.00276 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0854 0.5591 0.0005 6 6 3.8859 2.8338 0.0000 7 6 5.2156 3.1566 0.0000 8 7 5.4510 4.4435 0.0000 9 6 4.4196 5.2391 0.0006 10 7 4.4895 6.6153 0.0001 11 6 5.7937 7.2826 -0.0004 12 1 6.5008 6.6988 0.5889 13 6 6.3045 7.4025 -1.4377 14 6 5.6545 8.6579 0.5996 15 1 4.6911 9.0005 0.9470 16 6 6.7574 9.4784 0.7060 17 7 6.6362 10.6785 1.2301 18 14 8.4240 8.8855 0.1056 19 1 8.5960 9.2553 -1.3223 20 1 9.4959 9.5205 0.9139 21 1 8.5051 7.4096 0.2480 22 16 2.9676 4.3376 0.0004 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 6.0008 2.4151 0.0007 29 1 3.6751 7.1423 0.0002 30 1 6.4051 6.4077 -1.8717 31 1 5.5975 7.9863 -2.0271 32 1 7.2751 7.8986 -1.4380 33 1 7.4120 11.2559 1.3046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596107498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:22 Heat of formation + Delta-G solvation = -57.639351 kcal Electronic energy + Delta-G solvation = -17813.922169 eV Core-core repulsion = 14773.068352 eV Total energy + Delta-G solvation = -3040.853817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65420 -40.67471 -38.07269 -37.50109 -34.77120 -32.85564 -32.21435 -30.58112 -27.31930 -26.38896 -24.75140 -23.43212 -22.56902 -20.65866 -20.28615 -19.11293 -18.14763 -17.80449 -17.70162 -17.07393 -16.62630 -16.01998 -15.59385 -15.14910 -15.12146 -14.85962 -14.46183 -14.11797 -13.78425 -13.60042 -13.36653 -12.93675 -12.76499 -12.60515 -12.39771 -12.19765 -11.78119 -11.59373 -11.48310 -11.42249 -11.27640 -10.80237 -10.67074 -10.41874 -8.75865 -8.39647 -6.47616 -0.66872 -0.05231 0.63176 1.29899 1.33362 1.38492 1.46945 1.80490 2.09199 2.23596 2.26863 2.97081 3.48394 4.00825 4.04679 4.13891 4.26732 4.39114 4.42124 4.51957 4.64858 4.86059 4.89438 4.95314 4.98521 5.16074 5.26834 5.43372 5.44745 5.66992 6.06969 6.28131 6.55867 6.71956 6.90428 7.20059 8.75389 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046461 B = 0.003971 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.506631 B = 7048.613589 C = 7437.865367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.562 3.438 5 O -0.544 6.544 6 C -0.391 4.391 7 C 0.216 3.784 8 N -0.589 5.589 9 C 0.332 3.668 10 N -0.641 5.641 11 C 0.252 3.748 12 H 0.041 0.959 13 C -0.157 4.157 14 C -0.540 4.540 15 H 0.056 0.944 16 C 0.031 3.969 17 N -0.933 5.933 18 Si 0.939 3.061 19 H -0.261 1.261 20 H -0.296 1.296 21 H -0.252 1.252 22 S 0.200 5.800 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.200 0.800 29 H 0.423 0.577 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -17.261 -4.384 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.411 3.589 5 O -0.437 6.437 6 C -0.516 4.516 7 C 0.052 3.948 8 N -0.315 5.315 9 C -0.036 4.036 10 N -0.273 5.273 11 C 0.146 3.854 12 H 0.059 0.941 13 C -0.215 4.215 14 C -0.579 4.579 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.572 5.572 18 Si 0.766 3.234 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.176 1.176 22 S 0.450 5.550 23 H 0.087 0.913 24 H 0.120 0.880 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.217 0.783 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.420 -16.654 -4.331 20.117 hybrid contribution 1.392 -0.228 -0.003 1.411 sum -9.028 -16.882 -4.334 19.628 Atomic orbital electron populations 1.21829 0.90316 1.04427 1.03637 1.22916 0.97115 0.79525 1.02527 1.86198 1.22991 1.33826 1.84522 1.18009 0.80881 0.87606 0.72424 1.90854 1.60712 1.42323 1.49830 1.23188 0.97250 0.95515 1.35668 1.22445 0.94242 0.90693 0.87423 1.66400 1.31836 1.03616 1.29669 1.24416 0.94570 0.91360 0.93265 1.44583 1.11260 0.99339 1.72127 1.19000 0.81121 0.91391 0.93874 0.94114 1.22379 1.00370 1.00571 0.98207 1.21217 0.96817 0.98421 1.41399 0.92546 1.25549 1.02434 0.94464 0.94453 1.69970 1.32226 1.09471 1.45497 0.86002 0.79217 0.79759 0.78435 1.18653 1.22348 1.17593 1.83692 1.04559 0.94379 1.72335 0.91332 0.88000 0.91421 0.91428 0.91531 0.78334 0.73777 0.92798 0.91884 0.93737 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 1.00 6.10 71.98 0.44 1.44 16 3 O -0.36 -9.00 9.91 -58.71 -0.58 -9.58 16 4 C 0.56 16.43 7.73 68.68 0.53 16.96 16 5 O -0.54 -17.80 16.55 19.24 0.32 -17.48 16 6 C -0.39 -11.44 6.32 22.80 0.14 -11.29 16 7 C 0.22 6.57 11.08 84.51 0.94 7.51 16 8 N -0.59 -20.61 9.81 -200.59 -1.97 -22.58 16 9 C 0.33 10.99 8.01 179.43 1.44 12.43 16 10 N -0.64 -22.88 5.19 -334.33 -1.74 -24.62 16 11 C 0.25 10.87 2.27 44.24 0.10 10.97 16 12 H 0.04 1.91 6.80 -2.39 -0.02 1.90 16 13 C -0.16 -6.19 8.97 71.98 0.65 -5.55 16 14 C -0.54 -27.80 9.31 25.60 0.24 -27.56 16 15 H 0.06 3.12 7.98 -2.91 -0.02 3.09 16 16 C 0.03 1.69 5.45 84.65 0.46 2.15 16 17 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 18 Si 0.94 42.23 24.37 68.60 1.67 43.90 16 19 H -0.26 -11.06 6.87 99.48 0.68 -10.38 16 20 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.25 -10.91 6.53 99.48 0.65 -10.26 16 22 S 0.20 5.31 22.99 -56.49 -1.30 4.01 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.24 8.13 -2.39 -0.02 1.23 16 27 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.20 5.23 8.04 -2.91 -0.02 5.21 16 29 H 0.42 13.41 8.66 -92.70 -0.80 12.61 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 33 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -62.48 298.82 2.64 -59.84 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.26 Total: 14.46 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.67 Total: 6.02 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -3.40 Total: -101.17 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.26 Total: -27.06 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.67 Total: 43.90 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.30 Total: 4.01 kcal Total: -62.48 2.64 -59.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.201 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds