Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47327 * 2 1 4 4 C 1.34906 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.21646 * 119.99946 * 0.02562 * 4 3 2 6 6 C 1.46345 * 120.00038 * 179.97438 * 4 3 2 7 7 C 1.33589 * 125.21283 * 179.97438 * 6 4 3 8 8 N 1.34585 * 115.79198 * 180.02562 * 7 6 4 9 9 H 0.96998 * 122.48308 * 180.02562 * 8 7 6 10 10 C 1.35999 * 115.02314 * 0.02562 * 8 7 6 11 11 N 1.30834 * 125.51256 * 180.25864 * 10 8 7 12 12 C 1.46496 * 120.00086 * 179.71596 * 11 10 8 13 13 C 1.53001 * 109.47250 * 120.00227 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99715 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47293 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47206 * 120.00195 * 18 16 14 21 21 H 1.48498 * 109.47266 * 240.00193 * 18 16 14 22 22 S 1.75959 * 125.20894 * 0.03040 * 6 4 3 23 23 H 1.08996 * 109.47577 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47444 * 299.99750 * 1 2 3 25 25 H 1.09001 * 109.47577 * 59.99617 * 1 2 3 26 26 H 1.09006 * 109.46826 * 240.00265 * 2 1 3 27 27 H 1.08995 * 109.46922 * 120.00232 * 2 1 3 28 28 H 1.08004 * 122.09912 * 0.04324 * 7 6 4 29 29 H 1.09005 * 109.47033 * 240.00336 * 12 11 10 30 30 H 1.08998 * 109.47368 * 0.02562 * 12 11 10 31 31 H 1.08997 * 109.46885 * 300.00011 * 13 12 11 32 32 H 1.08998 * 109.47079 * 59.99646 * 13 12 11 33 33 H 0.97004 * 120.00349 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3438 1.5239 0.0005 5 8 4.0848 0.5592 0.0005 6 6 3.9032 2.8763 0.0000 7 6 5.2062 3.1709 0.0009 8 7 5.5101 4.4819 0.0008 9 1 6.4249 4.8046 0.0010 10 6 4.4396 5.3206 0.0002 11 7 4.4981 6.6277 -0.0049 12 6 3.2634 7.4161 -0.0112 13 6 3.2186 8.3036 1.2344 14 6 1.9489 9.1151 1.2276 15 1 1.2441 9.0083 0.4163 16 6 1.6865 9.9932 2.2577 17 7 2.5445 10.1228 3.2459 18 14 0.1128 10.9997 2.2490 19 1 -0.6777 10.6719 1.0353 20 1 -0.6853 10.6810 3.4600 21 1 0.4502 12.4458 2.2449 22 16 2.9625 4.3633 -0.0006 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.9678 2.4050 0.0015 29 1 3.2360 8.0412 -0.9038 30 1 2.4041 6.7456 -0.0102 31 1 3.2460 7.6785 2.1269 32 1 4.0780 8.9741 1.2339 33 1 2.3600 10.7409 3.9705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596191443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = -71.207428 kcal Electronic energy + Delta-G solvation = -17426.723814 eV Core-core repulsion = 14385.281641 eV Total energy + Delta-G solvation = -3041.442173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65806 -40.80332 -37.81183 -37.08423 -35.01233 -32.91730 -32.18593 -30.95170 -27.31910 -25.64503 -24.87571 -23.37022 -22.63255 -21.06306 -19.74041 -18.69482 -18.36943 -17.97040 -17.70513 -17.12293 -16.57745 -16.15124 -15.88180 -15.41520 -14.98017 -14.70770 -14.47811 -14.25942 -13.61924 -13.54232 -13.00810 -12.94467 -12.68169 -12.56973 -12.35492 -12.28580 -11.99117 -11.70901 -11.48349 -11.39973 -11.28372 -10.84786 -10.62423 -10.35050 -8.42761 -8.21695 -6.36109 -0.17723 0.13228 0.76892 1.01312 1.39827 1.42017 1.42367 1.56005 1.74417 1.89286 2.40836 3.10697 3.62692 3.87034 4.04244 4.10038 4.11259 4.17862 4.36377 4.39156 4.59044 4.83137 4.88503 4.94044 5.14060 5.26781 5.39135 5.43353 5.53835 5.72698 5.89007 6.15039 6.60799 6.65523 6.79778 7.33931 8.89619 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.004035 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.493935 B = 6937.107707 C = 7950.736831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.561 3.439 5 O -0.530 6.530 6 C -0.331 4.331 7 C 0.236 3.764 8 N -0.583 5.583 9 H 0.447 0.553 10 C 0.326 3.674 11 N -0.561 5.561 12 C 0.085 3.915 13 C 0.043 3.957 14 C -0.545 4.545 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.276 1.276 22 S 0.021 5.979 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.242 0.758 29 H 0.082 0.918 30 H 0.043 0.957 31 H -0.015 1.015 32 H -0.004 1.004 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -20.817 -8.043 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.407 3.593 5 O -0.422 6.422 6 C -0.455 4.455 7 C 0.094 3.906 8 N -0.204 5.204 9 H 0.290 0.710 10 C -0.061 4.061 11 N -0.291 5.291 12 C -0.045 4.045 13 C 0.005 3.995 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.795 3.205 19 H -0.182 1.182 20 H -0.203 1.203 21 H -0.202 1.202 22 S 0.258 5.742 23 H 0.123 0.877 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.004 0.996 32 H 0.014 0.986 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.264 -19.907 -7.906 21.456 hybrid contribution 0.470 0.102 0.395 0.623 sum 1.734 -19.805 -7.510 21.252 Atomic orbital electron populations 1.21847 0.90868 1.04429 1.03438 1.22956 0.96839 0.79159 1.02931 1.86203 1.23104 1.34107 1.83986 1.19174 0.80874 0.87211 0.71993 1.90859 1.60549 1.41814 1.48936 1.21610 0.96246 0.95118 1.32514 1.21416 0.96738 0.85610 0.86806 1.41391 1.09633 1.03239 1.66141 0.70972 1.24761 0.90302 0.92595 0.98458 1.71614 1.30972 1.01144 1.25364 1.22049 0.86838 0.95336 1.00280 1.18859 0.96057 0.93266 0.91321 1.21590 1.05583 1.23315 1.07885 0.91533 1.26011 1.00693 0.98143 0.94772 1.70122 1.37892 1.37754 1.11474 0.85306 0.78564 0.78031 0.78597 1.18228 1.20270 1.20193 1.86104 1.06917 0.95938 1.85230 0.87732 0.91864 0.91574 0.90759 0.91066 0.74197 0.90005 0.93892 0.99637 0.98595 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.99 6.10 71.98 0.44 1.42 16 3 O -0.36 -8.88 9.95 -58.21 -0.58 -9.46 16 4 C 0.56 14.22 7.91 69.93 0.55 14.77 16 5 O -0.53 -13.98 16.53 19.36 0.32 -13.66 16 6 C -0.33 -8.11 6.34 23.33 0.15 -7.96 16 7 C 0.24 4.12 10.96 83.22 0.91 5.03 16 8 N -0.58 -12.12 5.56 -197.46 -1.10 -13.21 16 9 H 0.45 6.56 8.96 -92.71 -0.83 5.73 16 10 C 0.33 10.37 8.36 179.86 1.50 11.87 16 11 N -0.56 -22.26 10.65 -348.00 -3.71 -25.97 16 12 C 0.08 3.84 6.28 86.38 0.54 4.38 16 13 C 0.04 2.40 5.30 29.85 0.16 2.55 16 14 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 15 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 16 C 0.00 0.11 5.46 84.66 0.46 0.58 16 17 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 18 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 S 0.02 0.66 21.23 -56.49 -1.20 -0.54 16 23 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 27 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 28 H 0.24 1.96 7.97 -2.91 -0.02 1.94 16 29 H 0.08 3.57 8.14 -2.38 -0.02 3.55 16 30 H 0.04 1.88 6.20 -2.39 -0.01 1.86 16 31 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -74.56 308.45 2.04 -72.51 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 0.30 Total: 1.37 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.69 Total: -0.08 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -4.52 Total: -96.66 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.26 Total: -23.12 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.20 Total: -0.54 kcal Total: -74.56 2.04 -72.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596191443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds