Wall clock time and date at job start Mon Mar 30 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.40790 * 120.00302 * 274.99895 * 13 3 2 15 15 C 1.38769 * 122.60643 * 359.71629 * 14 13 3 16 16 C 1.33414 * 114.87848 * 179.75755 * 15 14 13 17 17 C 1.50696 * 125.15393 * 180.20702 * 16 15 14 18 18 S 1.75862 * 109.68949 * 0.48036 * 16 15 14 19 19 C 1.33744 * 122.61207 * 180.02562 * 14 13 3 20 20 N 1.48074 * 125.19828 * 359.97438 * 19 14 13 21 21 O 1.21805 * 119.99789 * 359.97438 * 20 19 14 22 22 O 1.21802 * 120.00253 * 180.02562 * 20 19 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 1.07999 * 122.55783 * 359.97438 * 15 14 13 31 31 H 1.09003 * 109.47258 * 180.29264 * 17 16 15 32 32 H 1.09000 * 109.47472 * 300.28494 * 17 16 15 33 33 H 1.08994 * 109.47317 * 60.29061 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.3808 2.6898 1.3720 15 6 -0.5449 2.6897 0.3382 16 6 -1.7024 3.2897 0.6213 17 6 -2.8672 3.4191 -0.3261 18 16 -1.6600 3.9135 2.2650 19 6 -0.0267 3.3014 2.4894 20 7 0.7746 3.4410 3.7267 21 8 1.8999 2.9779 3.7791 22 8 0.3081 4.0182 4.6926 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 -0.3450 2.2355 -0.6210 31 1 -3.6773 3.9579 0.1654 32 1 -2.5536 3.9666 -1.2149 33 1 -3.2133 2.4265 -0.6141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596197136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:08 Heat of formation + Delta-G solvation = 20.134368 kcal Electronic energy + Delta-G solvation = -18915.230513 eV Core-core repulsion = 15877.749218 eV Total energy + Delta-G solvation = -3037.481295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41191 -39.13765 -35.91593 -35.59953 -33.17750 -31.91182 -30.39125 -28.27319 -27.00834 -24.27830 -23.34099 -22.21328 -20.62982 -19.70346 -18.48029 -17.71436 -16.97328 -16.87298 -16.03421 -15.33537 -14.95157 -14.47966 -14.33525 -13.69301 -13.31071 -12.97356 -12.49477 -12.43607 -12.06830 -11.93335 -11.53209 -11.10435 -11.01146 -10.98424 -10.94026 -10.66541 -10.64394 -10.50508 -10.32191 -9.96928 -9.53163 -9.22342 -8.84981 -8.62251 -7.12601 -6.34975 -4.44052 0.37063 1.17804 1.65743 1.84850 2.33776 2.87008 3.17707 3.22012 3.25674 3.92040 4.23712 4.66821 4.97925 5.06287 5.12184 5.36866 5.52991 5.77153 5.83520 5.92987 6.01924 6.16818 6.18143 6.57700 6.64350 6.85885 6.91693 7.06158 7.45485 7.50430 7.76240 7.88668 8.19981 8.32195 8.62492 9.23893 10.70663 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.006493 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.180615 B = 4311.132608 C = 5228.442706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.262 3.738 4 H 0.047 0.953 5 C -0.538 4.538 6 H 0.066 0.934 7 C 0.071 3.929 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.658 5.658 14 C 0.313 3.687 15 C -0.179 4.179 16 C -0.108 4.108 17 C -0.088 4.088 18 S 0.158 5.842 19 C -0.308 4.308 20 N 0.103 4.897 21 O -0.210 6.210 22 O -0.208 6.208 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.109 0.891 28 H 0.268 0.732 29 H 0.415 0.585 30 H 0.170 0.830 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 3.313 0.797 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.160 3.840 4 H 0.065 0.935 5 C -0.576 4.576 6 H 0.085 0.915 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.733 3.267 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.283 5.283 14 C 0.182 3.818 15 C -0.213 4.213 16 C -0.228 4.228 17 C -0.146 4.146 18 S 0.413 5.587 19 C -0.520 4.520 20 N 0.602 4.398 21 O -0.409 6.409 22 O -0.411 6.411 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.256 0.744 30 H 0.187 0.813 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.461 3.795 0.883 13.056 hybrid contribution 2.500 -0.831 -0.340 2.656 sum -9.961 2.964 0.542 10.407 Atomic orbital electron populations 1.22169 0.99033 0.99974 0.99957 1.22057 0.92153 0.99621 1.03563 1.19150 0.95753 0.89256 0.79811 0.93520 1.21130 0.90002 1.39653 1.06776 0.91547 1.24850 0.99164 0.94245 0.95051 1.69827 1.35606 1.37406 1.09399 0.86415 0.84084 0.78612 0.77611 1.19860 1.20979 1.19971 1.46768 1.10307 1.51744 1.19522 1.17030 0.88096 0.86708 0.89959 1.20054 0.92751 1.06894 1.01645 1.24755 0.99516 0.99968 0.98546 1.20488 0.93338 1.03755 0.97062 1.84062 1.06388 1.60298 1.07923 1.24340 1.02398 1.33132 0.92129 1.42111 0.99750 0.97475 1.00462 1.94400 1.04770 1.52599 1.89107 1.94464 1.75063 1.44367 1.27188 0.94217 0.93212 0.94037 0.94009 0.87340 0.92226 0.74380 0.81303 0.90825 0.89447 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.25 37.16 0.31 -2.40 16 2 C -0.14 -2.88 5.45 -26.73 -0.15 -3.03 16 3 C 0.26 5.90 2.21 -69.08 -0.15 5.74 16 4 H 0.05 1.10 6.75 -51.93 -0.35 0.75 16 5 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 6 H 0.07 1.69 7.74 -52.49 -0.41 1.29 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -22.61 11.29 55.43 0.63 -21.99 16 9 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.66 -13.72 5.17 -54.33 -0.28 -14.01 16 14 C 0.31 5.84 5.36 -85.12 -0.46 5.38 16 15 C -0.18 -2.80 6.81 -41.07 -0.28 -3.08 16 16 C -0.11 -1.38 6.51 -36.00 -0.23 -1.61 16 17 C -0.09 -0.74 10.37 36.00 0.37 -0.37 16 18 S 0.16 2.26 23.12 -107.50 -2.49 -0.22 16 19 C -0.31 -5.75 7.51 -11.18 -0.08 -5.84 16 20 N 0.10 2.14 4.46 33.50 0.15 2.29 16 21 O -0.21 -4.57 16.55 -29.46 -0.49 -5.05 16 22 O -0.21 -4.29 19.08 -29.46 -0.56 -4.85 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 25 H 0.04 0.72 5.39 -51.93 -0.28 0.44 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.11 2.56 5.95 -51.93 -0.31 2.25 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.41 9.00 5.89 -40.82 -0.24 8.76 16 30 H 0.17 2.62 4.65 -52.49 -0.24 2.38 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 288.84 15.07 4.35 4.35 Total: -1.00 -27.02 288.84 -8.19 -35.21 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.41 Total: 6.72 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.07 Total: -17.39 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.49 Total: -33.71 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.49 Total: -0.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.02 -8.19 -35.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596197136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.345 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds