Wall clock time and date at job start Mon Mar 30 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.40790 * 120.00302 * 274.99895 * 13 3 2 15 15 C 1.38769 * 122.60643 * 359.71629 * 14 13 3 16 16 C 1.33414 * 114.87848 * 179.75755 * 15 14 13 17 17 C 1.50696 * 125.15393 * 180.20702 * 16 15 14 18 18 S 1.75862 * 109.68949 * 0.48036 * 16 15 14 19 19 C 1.33744 * 122.61207 * 180.02562 * 14 13 3 20 20 N 1.48074 * 125.19828 * 359.97438 * 19 14 13 21 21 O 1.21805 * 119.99789 * 359.97438 * 20 19 14 22 22 O 1.21802 * 120.00253 * 180.02562 * 20 19 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 1.07999 * 122.55783 * 359.97438 * 15 14 13 31 31 H 1.09003 * 109.47258 * 180.29264 * 17 16 15 32 32 H 1.09000 * 109.47472 * 300.28494 * 17 16 15 33 33 H 1.08994 * 109.47317 * 60.29061 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.3808 2.6898 1.3720 15 6 -0.5449 2.6897 0.3382 16 6 -1.7024 3.2897 0.6213 17 6 -2.8672 3.4191 -0.3261 18 16 -1.6600 3.9135 2.2650 19 6 -0.0267 3.3014 2.4894 20 7 0.7746 3.4410 3.7267 21 8 1.8999 2.9779 3.7791 22 8 0.3081 4.0182 4.6926 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 -0.3450 2.2355 -0.6210 31 1 -3.6773 3.9579 0.1654 32 1 -2.5536 3.9666 -1.2149 33 1 -3.2133 2.4265 -0.6141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596197136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:08 Heat of formation + Delta-G solvation = 5.497787 kcal Electronic energy + Delta-G solvation = -18915.865203 eV Core-core repulsion = 15877.749218 eV Total energy + Delta-G solvation = -3038.115985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.97403 -40.54797 -37.49860 -37.16578 -34.66039 -33.55894 -31.78648 -29.55800 -28.67934 -25.76065 -25.01401 -23.46161 -22.20790 -21.17793 -20.04106 -19.27878 -18.54535 -18.46479 -17.57079 -16.84691 -16.52643 -15.93329 -15.75799 -14.83127 -14.64046 -14.39647 -13.85366 -13.49361 -13.32358 -13.28879 -13.19330 -12.83791 -12.75000 -12.60507 -12.31687 -12.27076 -12.22462 -12.13353 -11.82000 -11.63180 -11.17080 -10.82354 -10.49558 -10.05895 -8.55065 -8.26857 -6.41658 -1.04803 -0.10552 0.23560 0.56175 0.93785 1.40273 1.41510 1.48663 1.52700 2.28891 2.53034 3.03259 3.60010 3.67699 4.24277 4.39160 4.45441 4.49752 4.59348 4.77947 4.79368 4.92114 4.98804 5.17679 5.23995 5.24981 5.32003 5.44012 5.53307 5.72444 5.99271 6.16921 6.48511 6.64779 6.74894 7.28563 8.77188 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.006493 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.180615 B = 4311.132608 C = 5228.442706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.273 3.727 4 H 0.036 0.964 5 C -0.562 4.562 6 H 0.052 0.948 7 C 0.034 3.966 8 N -0.900 5.900 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.308 3.692 15 C -0.213 4.213 16 C -0.064 4.064 17 C -0.093 4.093 18 S 0.205 5.795 19 C -0.334 4.334 20 N 0.102 4.898 21 O -0.254 6.254 22 O -0.207 6.207 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.024 0.976 27 H 0.086 0.914 28 H 0.270 0.730 29 H 0.407 0.593 30 H 0.171 0.829 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 3.880 -0.224 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.054 0.946 5 C -0.600 4.600 6 H 0.070 0.930 7 C -0.168 4.168 8 N -0.537 5.537 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.200 1.200 12 H -0.201 1.201 13 N -0.300 5.300 14 C 0.178 3.822 15 C -0.246 4.246 16 C -0.185 4.185 17 C -0.151 4.151 18 S 0.460 5.540 19 C -0.546 4.546 20 N 0.594 4.406 21 O -0.443 6.443 22 O -0.412 6.412 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.188 0.812 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.928 4.349 -0.121 15.549 hybrid contribution 3.080 -0.908 -0.030 3.211 sum -11.848 3.442 -0.151 12.339 Atomic orbital electron populations 1.22043 0.95829 1.01223 1.00796 1.21889 0.95027 0.98384 1.01493 1.18851 0.94143 0.89814 0.80161 0.94638 1.21423 0.91853 1.39985 1.06753 0.92974 1.25462 1.02550 0.93972 0.94838 1.69902 1.36723 1.37532 1.09559 0.85606 0.80031 0.78357 0.77660 1.20049 1.20022 1.20096 1.46572 1.11562 1.53234 1.18629 1.17446 0.87607 0.86153 0.90944 1.20020 0.93435 1.09975 1.01209 1.25409 0.99442 0.95584 0.98026 1.20821 0.91950 1.05667 0.96672 1.83955 1.02503 1.59059 1.08450 1.24895 1.04513 1.34053 0.91098 1.42397 0.99794 0.97237 1.01152 1.94399 1.05916 1.54241 1.89734 1.94418 1.74829 1.44032 1.27930 0.92735 0.91669 0.93824 0.95693 0.89600 0.92051 0.75367 0.81161 0.88402 0.87567 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 8.25 71.98 0.59 -4.22 16 2 C -0.13 -5.59 5.45 30.60 0.17 -5.43 16 3 C 0.27 12.61 2.21 44.25 0.10 12.70 16 4 H 0.04 1.71 6.75 -2.39 -0.02 1.70 16 5 C -0.56 -29.34 8.73 25.60 0.22 -29.11 16 6 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 7 C 0.03 1.73 5.29 84.66 0.45 2.18 16 8 N -0.90 -46.38 11.29 21.45 0.24 -46.14 16 9 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 13 N -0.67 -29.04 5.17 -325.81 -1.68 -30.72 16 14 C 0.31 11.41 5.36 36.81 0.20 11.61 16 15 C -0.21 -6.25 6.81 21.30 0.15 -6.10 16 16 C -0.06 -1.39 6.51 24.59 0.16 -1.23 16 17 C -0.09 -1.06 10.37 71.23 0.74 -0.32 16 18 S 0.20 5.27 23.12 -56.49 -1.31 3.97 16 19 C -0.33 -12.28 7.51 80.89 0.61 -11.68 16 20 N 0.10 4.28 4.46 -47.92 -0.21 4.07 16 21 O -0.25 -11.56 16.55 18.88 0.31 -11.25 16 22 O -0.21 -8.55 19.08 18.88 0.36 -8.19 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.00 6.43 -2.39 -0.02 1.98 16 25 H 0.04 1.46 5.39 -2.38 -0.01 1.45 16 26 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 4.13 5.95 -2.39 -0.01 4.11 16 28 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.41 18.67 5.89 -92.71 -0.55 18.12 16 30 H 0.17 4.97 4.65 -2.91 -0.01 4.96 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -60.27 288.84 3.73 -56.54 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.61 Total: 19.89 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.38 Total: -31.60 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.65 Total: -72.79 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.67 Total: -19.44 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.31 Total: 3.97 kcal Total: -60.27 3.73 -56.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596197136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.039 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds