Wall clock time and date at job start Mon Mar 30 2020 00:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48506 * 109.46980 * 150.00109 * 3 2 1 7 7 C 1.37874 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00635 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99589 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.39004 * 120.00271 * 180.27567 * 13 11 10 15 15 N 1.29628 * 124.94082 * 0.02747 * 14 13 11 16 16 C 1.31983 * 116.91527 * 180.02562 * 15 14 13 17 17 C 1.33443 * 114.57259 * 359.97438 * 16 15 14 18 18 C 1.50693 * 125.97175 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47099 * 90.00051 * 18 17 16 20 20 O 1.42899 * 109.47066 * 179.97438 * 19 18 17 21 21 S 1.70970 * 124.94645 * 179.72384 * 14 13 11 22 22 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 60.00104 * 9 7 2 24 24 H 1.09000 * 109.47629 * 300.00433 * 9 7 2 25 25 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 26 26 H 1.09000 * 109.47665 * 300.00395 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.07999 * 122.71621 * 180.02562 * 16 15 14 29 29 H 1.08998 * 109.47666 * 210.00154 * 18 17 16 30 30 H 1.08997 * 109.47168 * 330.00023 * 18 17 16 31 31 H 1.08994 * 109.47212 * 300.00142 * 19 18 17 32 32 H 1.09005 * 109.46944 * 60.00147 * 19 18 17 33 33 H 0.96709 * 114.00232 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4709 -7.3381 -0.0064 15 7 0.1794 -7.4499 -0.0059 16 6 -0.3144 -8.6738 -0.0097 17 6 0.6035 -9.6425 -0.0142 18 6 0.3270 -11.1238 -0.0186 19 6 0.2314 -11.6205 -1.4626 20 8 -0.0301 -13.0253 -1.4668 21 16 2.1950 -8.8869 -0.0203 22 1 -0.4851 0.8401 -0.0004 23 1 0.6241 -2.5574 -0.8880 24 1 0.6247 -2.5563 0.8919 25 1 2.8727 -3.6038 0.8910 26 1 2.8714 -3.6047 -0.8890 27 1 3.1358 -6.1343 -0.0032 28 1 -1.3754 -8.8752 -0.0101 29 1 1.1359 -11.6460 0.4924 30 1 -0.6138 -11.3194 0.4959 31 1 -0.5775 -11.0984 -1.9736 32 1 1.1723 -11.4249 -1.9771 33 1 -0.1039 -13.4091 -2.3514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597664593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:44 Heat of formation + Delta-G solvation = -46.661093 kcal Electronic energy + Delta-G solvation = -17293.065244 eV Core-core repulsion = 14252.687480 eV Total energy + Delta-G solvation = -3040.377764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32407 -38.81898 -37.34341 -34.88602 -33.53915 -32.85354 -31.05958 -27.97509 -26.19210 -24.72338 -23.11432 -22.06298 -20.57965 -19.37781 -18.47009 -17.62462 -16.76488 -16.60266 -15.61036 -15.56687 -15.27986 -14.70711 -14.59508 -14.44888 -13.94891 -13.44836 -13.02632 -12.59321 -12.48741 -12.22841 -11.79582 -11.36535 -11.26172 -10.97323 -10.64406 -10.57929 -10.34872 -10.04491 -9.96341 -9.67749 -9.32647 -9.18520 -8.96733 -8.37092 -8.17990 -6.00036 -4.05281 0.66654 0.90037 1.53914 2.72758 3.03919 3.27557 3.31160 3.37497 3.39803 3.85176 4.41872 4.55777 4.64976 4.79284 4.94808 5.16828 5.28758 5.35033 5.35349 5.62015 5.72775 5.90953 6.06502 6.07366 6.36471 6.71555 7.20878 7.21430 7.68602 7.77608 7.90870 8.00793 8.30546 8.52300 9.02543 9.58685 11.10820 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063802 B = 0.002960 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.752529 B = 9458.625865 C = 9727.942904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.500 3.500 12 O -0.460 6.460 13 N -0.644 5.644 14 C 0.291 3.709 15 N -0.481 5.481 16 C 0.083 3.917 17 C -0.258 4.258 18 C -0.030 4.030 19 C 0.079 3.921 20 O -0.576 6.576 21 S 0.101 5.899 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.026 0.974 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.420 0.580 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -23.376 -2.174 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.285 3.715 12 O -0.326 6.326 13 N -0.296 5.296 14 C -0.078 4.078 15 N -0.201 5.201 16 C -0.069 4.069 17 C -0.380 4.380 18 C -0.071 4.071 19 C 0.000 4.000 20 O -0.382 6.382 21 S 0.352 5.648 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.257 0.743 28 H 0.193 0.807 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.361 -22.851 -1.524 23.521 hybrid contribution 0.072 0.779 -0.626 1.002 sum 5.433 -22.072 -2.151 22.833 Atomic orbital electron populations 1.69996 1.06081 1.26718 1.49871 1.25028 0.94836 0.99300 0.95198 0.86569 0.79746 0.83408 0.78090 1.20639 1.21190 1.19858 1.21169 0.92944 0.90826 1.51807 0.92473 1.18945 0.93131 0.89204 0.98894 1.21947 1.00896 0.90503 1.03061 1.22153 0.89336 0.84675 0.75295 1.90801 1.13758 1.86011 1.42027 1.43859 1.10274 1.02247 1.73269 1.23940 0.91432 0.91782 1.00654 1.66644 1.08708 1.24248 1.20544 1.21667 1.01228 0.84953 0.99018 1.25277 0.93652 1.00165 1.18913 1.19696 1.03771 0.87169 0.96415 1.22221 0.99728 0.81217 0.96804 1.86430 1.95169 1.22532 1.34062 1.83800 1.09759 0.98227 1.73061 0.92852 0.95626 0.95598 0.89608 0.89606 0.74322 0.80656 0.90129 0.89071 0.93059 0.93455 0.77098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.94 4.26 -27.88 -0.12 0.83 16 10 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.50 9.59 7.79 -10.98 -0.09 9.50 16 12 O -0.46 -11.08 14.62 5.55 0.08 -11.00 16 13 N -0.64 -9.32 5.40 -13.07 -0.07 -9.39 16 14 C 0.29 4.34 8.02 -87.34 -0.70 3.64 16 15 N -0.48 -8.31 8.65 -15.12 -0.13 -8.44 16 16 C 0.08 1.10 11.24 -19.16 -0.22 0.89 16 17 C -0.26 -2.78 5.84 -35.99 -0.21 -2.99 16 18 C -0.03 -0.26 6.12 -27.89 -0.17 -0.43 16 19 C 0.08 0.60 7.03 37.16 0.26 0.86 16 20 O -0.58 -4.45 13.66 -35.23 -0.48 -4.93 16 21 S 0.10 1.07 23.22 -107.50 -2.50 -1.43 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.42 4.18 8.82 -40.82 -0.36 3.82 16 28 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.38 1.25 9.12 45.56 0.42 1.66 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -36.67 307.29 -7.85 -44.51 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.29 Total: -0.18 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.81 Total: -3.69 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.53 Total: -44.32 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.40 Total: -15.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.67 -7.85 -44.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597664593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds