Wall clock time and date at job start Mon Mar 30 2020 00:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48506 * 109.46980 * 150.00109 * 3 2 1 7 7 C 1.37874 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00635 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99589 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.39004 * 120.00271 * 180.27567 * 13 11 10 15 15 N 1.29628 * 124.94082 * 0.02747 * 14 13 11 16 16 C 1.31983 * 116.91527 * 180.02562 * 15 14 13 17 17 C 1.33443 * 114.57259 * 359.97438 * 16 15 14 18 18 C 1.50693 * 125.97175 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47099 * 90.00051 * 18 17 16 20 20 O 1.42899 * 109.47066 * 179.97438 * 19 18 17 21 21 S 1.70970 * 124.94645 * 179.72384 * 14 13 11 22 22 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 60.00104 * 9 7 2 24 24 H 1.09000 * 109.47629 * 300.00433 * 9 7 2 25 25 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 26 26 H 1.09000 * 109.47665 * 300.00395 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.07999 * 122.71621 * 180.02562 * 16 15 14 29 29 H 1.08998 * 109.47666 * 210.00154 * 18 17 16 30 30 H 1.08997 * 109.47168 * 330.00023 * 18 17 16 31 31 H 1.08994 * 109.47212 * 300.00142 * 19 18 17 32 32 H 1.09005 * 109.46944 * 60.00147 * 19 18 17 33 33 H 0.96709 * 114.00232 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4709 -7.3381 -0.0064 15 7 0.1794 -7.4499 -0.0059 16 6 -0.3144 -8.6738 -0.0097 17 6 0.6035 -9.6425 -0.0142 18 6 0.3270 -11.1238 -0.0186 19 6 0.2314 -11.6205 -1.4626 20 8 -0.0301 -13.0253 -1.4668 21 16 2.1950 -8.8869 -0.0203 22 1 -0.4851 0.8401 -0.0004 23 1 0.6241 -2.5574 -0.8880 24 1 0.6247 -2.5563 0.8919 25 1 2.8727 -3.6038 0.8910 26 1 2.8714 -3.6047 -0.8890 27 1 3.1358 -6.1343 -0.0032 28 1 -1.3754 -8.8752 -0.0101 29 1 1.1359 -11.6460 0.4924 30 1 -0.6138 -11.3194 0.4959 31 1 -0.5775 -11.0984 -1.9736 32 1 1.1723 -11.4249 -1.9771 33 1 -0.1039 -13.4091 -2.3514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597664593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:43 Heat of formation + Delta-G solvation = -75.449058 kcal Electronic energy + Delta-G solvation = -17294.313584 eV Core-core repulsion = 14252.687480 eV Total energy + Delta-G solvation = -3041.626104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55657 -40.08524 -37.96613 -36.16333 -35.57047 -33.77680 -32.94231 -29.08419 -27.81138 -26.02313 -24.23454 -23.37179 -22.02903 -20.51839 -19.62220 -18.68723 -18.19584 -17.75169 -17.14092 -16.94545 -16.45545 -15.94533 -15.75333 -15.55014 -15.05555 -14.93261 -14.25090 -14.13470 -13.87814 -13.31506 -13.28229 -12.82727 -12.49846 -12.48181 -12.18982 -11.93875 -11.76163 -11.66577 -11.37333 -11.22184 -10.90887 -10.57107 -10.27863 -10.24178 -9.22952 -8.18310 -6.32638 -0.35558 -0.09049 0.58432 1.42923 1.45609 1.48015 1.56504 1.93608 2.03246 2.43171 3.15209 3.24898 3.42868 4.00134 4.01504 4.09521 4.34483 4.43106 4.45436 4.51940 4.60484 4.84585 4.99906 5.01846 5.04243 5.26812 5.49788 5.60148 5.84070 6.03745 6.15320 6.81223 6.86887 6.87036 7.20198 7.37980 8.94486 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063802 B = 0.002960 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.752529 B = 9458.625865 C = 9727.942904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.040 3.960 10 C -0.111 4.111 11 C 0.506 3.494 12 O -0.524 6.524 13 N -0.626 5.626 14 C 0.244 3.756 15 N -0.533 5.533 16 C 0.052 3.948 17 C -0.237 4.237 18 C -0.032 4.032 19 C 0.081 3.919 20 O -0.591 6.591 21 S 0.196 5.804 22 H 0.262 0.738 23 H -0.018 1.018 24 H -0.018 1.018 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.441 0.559 28 H 0.185 0.815 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 -24.992 -2.342 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.099 0.901 9 C 0.002 3.998 10 C -0.151 4.151 11 C 0.292 3.708 12 O -0.395 6.395 13 N -0.280 5.280 14 C -0.123 4.123 15 N -0.255 5.255 16 C -0.099 4.099 17 C -0.360 4.360 18 C -0.072 4.072 19 C 0.003 3.997 20 O -0.400 6.400 21 S 0.448 5.552 22 H 0.071 0.929 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.283 0.717 28 H 0.202 0.798 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.528 -24.534 -1.707 26.030 hybrid contribution -0.897 1.031 -0.586 1.487 sum 7.631 -23.503 -2.294 24.817 Atomic orbital electron populations 1.70187 1.08414 1.27823 1.51511 1.26164 0.95697 1.04078 0.94678 0.85303 0.78695 0.77625 0.78502 1.19725 1.21427 1.17669 1.21703 0.94167 0.91320 1.50695 0.90105 1.18719 0.93744 0.92476 0.94813 1.21695 0.99296 0.88176 1.05920 1.21949 0.88432 0.86005 0.74406 1.90782 1.16269 1.87099 1.45334 1.43283 1.11090 1.01293 1.72377 1.24115 0.91851 0.93380 1.02969 1.66574 1.10878 1.26937 1.21077 1.21811 1.02322 0.84477 1.01254 1.25724 0.93952 1.01106 1.15196 1.19810 1.04558 0.85334 0.97499 1.22136 1.00181 0.81444 0.95946 1.86376 1.95186 1.22352 1.36046 1.83413 1.07525 0.93686 1.70625 0.92895 0.99936 0.99944 0.86621 0.86554 0.71717 0.79782 0.89053 0.88455 0.93037 0.92718 0.74901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.11 -4.24 5.64 29.85 0.17 -4.07 16 11 C 0.51 19.81 7.79 87.66 0.68 20.49 16 12 O -0.52 -26.82 14.62 -3.04 -0.04 -26.86 16 13 N -0.63 -17.60 5.40 -313.64 -1.69 -19.29 16 14 C 0.24 7.12 8.02 179.20 1.44 8.56 16 15 N -0.53 -18.86 8.65 -201.75 -1.75 -20.61 16 16 C 0.05 1.38 11.24 83.58 0.94 2.32 16 17 C -0.24 -4.65 5.84 24.60 0.14 -4.51 16 18 C -0.03 -0.46 6.12 29.85 0.18 -0.27 16 19 C 0.08 1.04 7.03 71.98 0.51 1.54 16 20 O -0.59 -7.59 13.66 -148.98 -2.03 -9.63 16 21 S 0.20 3.60 23.22 -56.49 -1.31 2.29 16 22 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 23 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 24 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 25 H 0.12 3.73 8.14 -2.38 -0.02 3.71 16 26 H 0.12 3.73 8.14 -2.39 -0.02 3.72 16 27 H 0.44 7.75 8.82 -92.71 -0.82 6.93 16 28 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.40 1.63 9.12 -74.05 -0.68 0.95 16 Total: -1.00 -84.73 307.29 0.02 -84.71 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.34 Total: 6.62 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.88 Total: -3.67 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.15 Total: -99.45 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -2.08 Total: -36.49 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.31 Total: 2.29 kcal Total: -84.73 0.02 -84.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597664593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.263 kcal (2) G-P(sol) polarization free energy of solvation -84.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds