Wall clock time and date at job start Mon Mar 30 2020 00:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00042 * 2 1 4 4 H 1.48504 * 109.46644 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.46870 * 29.99580 * 3 2 1 6 6 H 1.48497 * 109.47148 * 149.99668 * 3 2 1 7 7 C 1.37878 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99973 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47045 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39006 * 120.00092 * 179.97438 * 13 11 10 15 15 N 1.29623 * 124.94958 * 180.02562 * 14 13 11 16 16 C 1.31985 * 116.92158 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.71403 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47001 * 304.97310 * 17 16 15 19 19 O 1.42905 * 109.46894 * 180.02562 * 18 17 16 20 20 C 1.33442 * 114.56747 * 0.02562 * 16 15 14 21 21 S 1.70968 * 124.94258 * 0.03053 * 14 13 11 22 22 H 0.96994 * 119.99795 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47117 * 60.00248 * 9 7 2 24 24 H 1.08995 * 109.47136 * 299.99731 * 9 7 2 25 25 H 1.08996 * 109.46990 * 59.99944 * 10 9 7 26 26 H 1.08995 * 109.47051 * 299.99926 * 10 9 7 27 27 H 0.96995 * 120.00069 * 0.02562 * 13 11 10 28 28 H 1.08993 * 109.47088 * 64.97454 * 17 16 15 29 29 H 1.08999 * 109.46573 * 184.97761 * 17 16 15 30 30 H 1.09002 * 109.47585 * 299.99980 * 18 17 16 31 31 H 1.08998 * 109.47531 * 60.00470 * 18 17 16 32 32 H 0.96705 * 114.00095 * 180.02562 * 19 18 17 33 33 H 1.07997 * 125.96916 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6365 0.0035 12 8 6.1350 -1.5861 0.0030 13 7 6.2025 -3.8037 0.0052 14 6 7.5925 -3.8037 0.0058 15 7 8.3350 -4.8662 0.0069 16 6 9.6420 -4.6819 0.0078 17 6 10.6255 -5.8237 0.0097 18 6 10.3309 -6.7486 1.1923 19 8 11.2639 -7.8310 1.1944 20 6 10.0219 -3.4027 0.0080 21 16 8.5718 -2.4023 0.0053 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8753 -0.6804 -0.8888 25 1 3.6586 -3.1509 -0.8875 26 1 3.6579 -3.1497 0.8924 27 1 5.7175 -4.6437 0.0052 28 1 10.5341 -6.3836 -0.9210 29 1 11.6382 -5.4307 0.0994 30 1 10.4223 -6.1888 2.1231 31 1 9.3182 -7.1417 1.1027 32 1 11.1362 -8.4591 1.9186 33 1 11.0403 -3.0435 0.0084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597682968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:53 Heat of formation + Delta-G solvation = -50.638190 kcal Electronic energy + Delta-G solvation = -17461.687568 eV Core-core repulsion = 14421.137345 eV Total energy + Delta-G solvation = -3040.550224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48539 -39.52590 -37.13645 -35.07544 -33.72777 -32.12003 -31.38779 -28.85780 -26.71301 -24.58079 -23.15284 -21.75842 -20.78883 -19.46335 -18.20165 -17.52139 -17.27523 -16.72035 -16.19780 -15.94699 -15.36451 -14.67374 -14.29170 -14.16023 -13.90048 -13.76784 -13.10475 -12.92776 -12.68626 -12.36156 -11.67563 -11.61293 -11.37140 -11.10357 -10.82839 -10.35599 -10.24316 -10.20461 -9.92757 -9.77014 -9.65710 -9.32408 -9.21098 -8.60819 -8.27715 -6.12366 -4.12802 0.72568 1.14918 1.87311 2.32487 2.66110 2.93371 3.30729 3.38174 3.46338 3.96142 4.38463 4.41616 4.85452 4.96010 5.01621 5.12245 5.22541 5.30372 5.41669 5.65108 5.74481 5.80032 5.82197 5.84490 6.18100 6.41329 6.95137 7.16910 7.24043 7.31306 7.63748 7.72907 7.93956 8.40074 8.89262 9.49383 11.00179 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045548 B = 0.003452 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.591096 B = 8109.435449 C = 8616.357600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.114 4.114 11 C 0.509 3.491 12 O -0.500 6.500 13 N -0.631 5.631 14 C 0.254 3.746 15 N -0.521 5.521 16 C 0.091 3.909 17 C -0.039 4.039 18 C 0.083 3.917 19 O -0.578 6.578 20 C -0.325 4.325 21 S 0.246 5.754 22 H 0.265 0.735 23 H 0.027 0.973 24 H 0.022 0.978 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.424 0.576 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.381 0.619 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.019 -11.240 1.783 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.037 4.037 10 C -0.154 4.154 11 C 0.298 3.702 12 O -0.373 6.373 13 N -0.281 5.281 14 C -0.114 4.114 15 N -0.245 5.245 16 C -0.041 4.041 17 C -0.079 4.079 18 C 0.005 3.995 19 O -0.384 6.384 20 C -0.466 4.466 21 S 0.497 5.503 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.262 0.738 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 19.892 -9.414 1.252 22.043 hybrid contribution 0.399 -0.637 0.465 0.884 sum 20.292 -10.051 1.717 22.710 Atomic orbital electron populations 1.69901 1.06315 1.27144 1.50472 1.24965 0.94721 0.99256 0.94164 0.86804 0.80591 0.83392 0.78816 1.20147 1.21336 1.18518 1.21029 0.88913 0.94735 1.52046 0.90758 1.19428 0.96870 0.89415 0.98019 1.21744 0.84831 1.04346 1.04461 1.22278 0.92650 0.81493 0.73770 1.90607 1.69262 1.30628 1.46837 1.43382 1.01077 1.12061 1.71620 1.23573 0.90857 0.94767 1.02168 1.66125 1.04600 1.30247 1.23510 1.19465 0.88893 0.93843 1.01948 1.19962 0.96123 0.92442 0.99398 1.22062 0.92293 0.87697 0.97459 1.86419 1.57658 1.39298 1.55017 1.27252 1.05483 0.97390 1.16478 1.85161 0.92298 1.05485 1.67387 0.92558 0.95515 0.95944 0.88443 0.88438 0.73782 0.89632 0.89645 0.93769 0.92507 0.77241 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.53 -14.35 9.66 -34.44 -0.33 -14.68 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 10 C -0.11 -1.95 5.64 -27.88 -0.16 -2.11 16 11 C 0.51 8.28 7.79 -10.99 -0.09 8.19 16 12 O -0.50 -9.58 13.45 5.55 0.07 -9.51 16 13 N -0.63 -8.49 5.40 -13.07 -0.07 -8.56 16 14 C 0.25 3.64 8.19 -87.35 -0.72 2.92 16 15 N -0.52 -7.17 10.39 -11.28 -0.12 -7.29 16 16 C 0.09 1.11 6.07 -84.20 -0.51 0.60 16 17 C -0.04 -0.39 6.08 -27.88 -0.17 -0.56 16 18 C 0.08 0.78 6.95 37.15 0.26 1.04 16 19 O -0.58 -5.17 13.66 -35.23 -0.48 -5.65 16 20 C -0.33 -3.73 11.05 29.06 0.32 -3.41 16 21 S 0.25 3.39 20.22 -107.50 -2.17 1.22 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.03 0.64 7.16 -51.93 -0.37 0.26 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.42 4.47 8.82 -40.82 -0.36 4.11 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.38 1.68 9.12 45.56 0.42 2.10 16 33 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -33.13 301.18 -6.95 -40.08 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.24 Total: 0.68 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.58 Total: -6.16 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.59 Total: -42.13 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.41 Total: -15.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.17 Total: 1.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.13 -6.95 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597682968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.560 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds