Wall clock time and date at job start Mon Mar 30 2020 00:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00042 * 2 1 4 4 H 1.48504 * 109.46644 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.46870 * 29.99580 * 3 2 1 6 6 H 1.48497 * 109.47148 * 149.99668 * 3 2 1 7 7 C 1.37878 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99973 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47045 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39006 * 120.00092 * 179.97438 * 13 11 10 15 15 N 1.29623 * 124.94958 * 180.02562 * 14 13 11 16 16 C 1.31985 * 116.92158 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.71403 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47001 * 304.97310 * 17 16 15 19 19 O 1.42905 * 109.46894 * 180.02562 * 18 17 16 20 20 C 1.33442 * 114.56747 * 0.02562 * 16 15 14 21 21 S 1.70968 * 124.94258 * 0.03053 * 14 13 11 22 22 H 0.96994 * 119.99795 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47117 * 60.00248 * 9 7 2 24 24 H 1.08995 * 109.47136 * 299.99731 * 9 7 2 25 25 H 1.08996 * 109.46990 * 59.99944 * 10 9 7 26 26 H 1.08995 * 109.47051 * 299.99926 * 10 9 7 27 27 H 0.96995 * 120.00069 * 0.02562 * 13 11 10 28 28 H 1.08993 * 109.47088 * 64.97454 * 17 16 15 29 29 H 1.08999 * 109.46573 * 184.97761 * 17 16 15 30 30 H 1.09002 * 109.47585 * 299.99980 * 18 17 16 31 31 H 1.08998 * 109.47531 * 60.00470 * 18 17 16 32 32 H 0.96705 * 114.00095 * 180.02562 * 19 18 17 33 33 H 1.07997 * 125.96916 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6365 0.0035 12 8 6.1350 -1.5861 0.0030 13 7 6.2025 -3.8037 0.0052 14 6 7.5925 -3.8037 0.0058 15 7 8.3350 -4.8662 0.0069 16 6 9.6420 -4.6819 0.0078 17 6 10.6255 -5.8237 0.0097 18 6 10.3309 -6.7486 1.1923 19 8 11.2639 -7.8310 1.1944 20 6 10.0219 -3.4027 0.0080 21 16 8.5718 -2.4023 0.0053 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8753 -0.6804 -0.8888 25 1 3.6586 -3.1509 -0.8875 26 1 3.6579 -3.1497 0.8924 27 1 5.7175 -4.6437 0.0052 28 1 10.5341 -6.3836 -0.9210 29 1 11.6382 -5.4307 0.0994 30 1 10.4223 -6.1888 2.1231 31 1 9.3182 -7.1417 1.1027 32 1 11.1362 -8.4591 1.9186 33 1 11.0403 -3.0435 0.0084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597682968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:53 Heat of formation + Delta-G solvation = -75.978786 kcal Electronic energy + Delta-G solvation = -17462.786419 eV Core-core repulsion = 14421.137345 eV Total energy + Delta-G solvation = -3041.649075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63467 -40.62489 -37.84382 -36.22683 -35.60374 -33.51068 -32.77913 -29.81729 -28.37142 -25.71957 -24.18818 -23.08528 -22.17467 -20.63587 -19.34571 -19.01644 -18.24426 -17.73507 -17.66123 -17.15328 -16.26005 -16.18734 -15.66631 -15.45378 -14.90226 -14.82833 -14.68635 -14.30436 -14.05634 -13.46200 -13.17097 -12.92564 -12.54802 -12.33298 -12.09136 -11.98716 -11.85273 -11.75912 -11.40452 -11.04362 -10.92769 -10.77017 -10.76699 -10.25445 -9.29463 -8.30284 -6.33835 -0.30460 0.12900 0.89462 1.18279 1.35779 1.38488 1.51326 1.53101 1.86498 2.35942 3.06055 3.24302 3.50656 3.73620 4.12903 4.24736 4.30000 4.35747 4.42779 4.51852 4.57975 4.77176 4.91492 4.97076 5.01190 5.21623 5.33638 5.42046 5.60561 5.88507 6.23607 6.68994 6.71287 6.78590 6.86073 7.31709 8.85244 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045548 B = 0.003452 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.591096 B = 8109.435449 C = 8616.357600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.003 3.997 10 C -0.106 4.106 11 C 0.518 3.482 12 O -0.532 6.532 13 N -0.616 5.616 14 C 0.234 3.766 15 N -0.522 5.522 16 C 0.077 3.923 17 C -0.038 4.038 18 C 0.088 3.912 19 O -0.590 6.590 20 C -0.303 4.303 21 S 0.216 5.784 22 H 0.267 0.733 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.437 0.563 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.399 0.601 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.315 -11.853 1.908 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.035 4.035 10 C -0.146 4.146 11 C 0.307 3.693 12 O -0.408 6.408 13 N -0.268 5.268 14 C -0.133 4.133 15 N -0.246 5.246 16 C -0.055 4.055 17 C -0.077 4.077 18 C 0.010 3.990 19 O -0.399 6.399 20 C -0.443 4.443 21 S 0.467 5.533 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.278 0.722 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.249 0.751 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 22.209 -10.092 1.386 24.434 hybrid contribution -0.242 -0.584 0.437 0.769 sum 21.967 -10.677 1.823 24.493 Atomic orbital electron populations 1.70025 1.07922 1.28100 1.52482 1.25813 0.95450 1.02933 0.94311 0.85841 0.79441 0.79415 0.79113 1.19458 1.20868 1.17877 1.21398 0.91205 0.93749 1.50341 0.92989 1.19278 0.94016 0.93134 0.97110 1.21525 0.85742 1.00933 1.06378 1.21849 0.92112 0.81736 0.73585 1.90610 1.69763 1.31904 1.48509 1.42999 1.01108 1.11811 1.70833 1.23655 0.90961 0.95000 1.03719 1.66139 1.05449 1.30159 1.22894 1.19860 0.88606 0.94889 1.02167 1.20017 0.96324 0.91881 0.99523 1.21946 0.91874 0.87829 0.97389 1.86370 1.57522 1.39674 1.56348 1.27530 1.05851 0.96475 1.14465 1.85264 0.93877 1.06538 1.67648 0.92434 0.96435 0.96596 0.86627 0.86606 0.72205 0.89890 0.87875 0.93343 0.93458 0.75065 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 2 C 0.01 0.72 5.47 84.65 0.46 1.19 16 3 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.25 -11.78 6.54 99.48 0.65 -11.13 16 7 C -0.53 -28.80 9.66 25.60 0.25 -28.55 16 8 H 0.05 2.99 7.99 -2.91 -0.02 2.96 16 9 C 0.00 0.12 3.33 29.85 0.10 0.22 16 10 C -0.11 -3.48 5.64 29.85 0.17 -3.31 16 11 C 0.52 16.18 7.79 87.66 0.68 16.87 16 12 O -0.53 -19.95 13.45 -3.05 -0.04 -19.99 16 13 N -0.62 -15.66 5.40 -313.64 -1.69 -17.35 16 14 C 0.23 6.37 8.19 179.20 1.47 7.84 16 15 N -0.52 -13.46 10.39 -189.59 -1.97 -15.43 16 16 C 0.08 1.69 6.07 41.45 0.25 1.94 16 17 C -0.04 -0.65 6.08 29.85 0.18 -0.47 16 18 C 0.09 1.46 6.95 71.98 0.50 1.96 16 19 O -0.59 -9.22 13.66 -148.98 -2.04 -11.25 16 20 C -0.30 -6.16 11.05 66.73 0.74 -5.43 16 21 S 0.22 5.68 20.22 -56.49 -1.14 4.54 16 22 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 23 H 0.02 0.81 7.16 -2.38 -0.02 0.80 16 24 H 0.02 0.73 7.53 -2.39 -0.02 0.71 16 25 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.44 8.41 8.82 -92.71 -0.82 7.59 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.40 2.66 9.12 -74.05 -0.68 1.98 16 33 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -70.67 301.18 -0.30 -70.97 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -0.40 Total: 7.13 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.80 Total: -7.75 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -3.37 Total: -90.16 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.08 Total: -31.25 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.14 Total: 4.54 kcal Total: -70.67 -0.30 -70.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597682968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.008 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds