Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99624 * 2 1 4 4 C 1.37569 * 120.82112 * 180.02562 * 3 2 1 5 5 C 1.38035 * 114.24917 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76124 * 180.02562 * 5 4 3 7 7 O 1.21629 * 120.00189 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46641 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46790 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47172 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99482 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99963 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47308 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47034 * 120.00508 * 16 14 12 19 19 H 1.48504 * 109.47274 * 240.00420 * 16 14 12 20 20 S 1.77239 * 104.48148 * 359.97438 * 5 4 3 21 21 N 1.30357 * 120.82839 * 0.02562 * 3 2 1 22 22 H 1.08997 * 109.47023 * 60.00447 * 1 2 3 23 23 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47156 * 300.00498 * 1 2 3 25 25 H 1.08004 * 122.87524 * 0.03450 * 4 3 2 26 26 H 0.96995 * 119.99507 * 0.02562 * 8 6 5 27 27 H 1.08997 * 109.47563 * 300.00156 * 9 8 6 28 28 H 1.08996 * 109.47127 * 60.00517 * 9 8 6 29 29 H 1.09005 * 109.47001 * 299.99982 * 10 9 8 30 30 H 1.08996 * 109.47061 * 60.00327 * 10 9 8 31 31 H 1.08997 * 109.47158 * 299.99849 * 11 10 9 32 32 H 1.09002 * 109.47623 * 59.99742 * 11 10 9 33 33 H 0.97007 * 120.00118 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 0.0001 6 6 5.3049 3.0353 -0.0007 7 8 6.1993 2.2110 -0.0017 8 7 5.6004 4.3503 -0.0004 9 6 6.9988 4.7868 -0.0007 10 6 7.0558 6.3158 0.0003 11 6 8.5163 6.7717 -0.0006 12 6 8.5724 8.2776 -0.0002 13 1 7.6578 8.8521 0.0011 14 6 9.7913 8.9220 -0.0003 15 7 10.9049 8.2225 -0.0013 16 14 9.8609 10.7888 0.0009 17 1 8.4802 11.3356 0.0026 18 1 10.5796 11.2565 1.2133 19 1 10.5782 11.2582 -1.2117 20 16 2.4471 3.6111 0.0006 21 7 1.3521 2.3149 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 4.0643 0.4373 -0.0015 26 1 4.8871 5.0076 0.0007 27 1 7.4990 4.4043 0.8890 28 1 7.4984 4.4049 -0.8910 29 1 6.5554 6.6986 -0.8892 30 1 6.5562 6.6973 0.8908 31 1 9.0169 6.3888 0.8887 32 1 9.0155 6.3901 -0.8912 33 1 11.7625 8.6759 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598681720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = -64.015090 kcal Electronic energy + Delta-G solvation = -17135.831056 eV Core-core repulsion = 14094.700766 eV Total energy + Delta-G solvation = -3041.130290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38926 -40.71265 -37.62896 -36.98516 -35.25997 -33.30787 -32.32936 -29.32415 -28.55153 -26.23841 -24.61749 -22.67904 -22.37995 -20.98823 -19.75533 -18.82413 -18.51373 -17.34815 -17.32600 -17.06808 -16.78772 -16.43088 -15.76526 -15.53983 -15.17672 -14.50707 -14.44957 -14.26799 -13.76048 -13.53623 -13.02170 -12.77686 -12.61358 -12.53584 -12.33847 -12.14769 -12.01279 -11.68363 -11.67283 -11.31163 -11.12755 -10.95898 -10.53822 -10.26625 -9.50510 -8.17764 -6.28449 -1.07090 -0.01292 0.37668 1.03398 1.43256 1.43885 1.56442 1.65350 1.83578 2.25630 2.44086 3.16594 3.38661 3.74098 4.04712 4.15250 4.22548 4.29837 4.35614 4.53612 4.55942 4.71981 4.89650 4.95504 4.95545 5.18997 5.27510 5.54707 5.73782 5.87098 5.91901 6.22692 6.27904 6.88351 6.89517 7.41135 8.94399 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052183 B = 0.002849 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.439812 B = 9826.918936 C =10332.308725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.303 3.697 4 C -0.128 4.128 5 C -0.191 4.191 6 C 0.591 3.409 7 O -0.555 6.555 8 N -0.701 5.701 9 C 0.128 3.872 10 C -0.105 4.105 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.281 1.281 20 S 0.332 5.668 21 N -0.522 5.522 22 H 0.061 0.939 23 H 0.131 0.869 24 H 0.061 0.939 25 H 0.183 0.817 26 H 0.414 0.586 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H -0.005 1.005 32 H -0.005 1.005 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 -12.651 0.005 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.209 6.209 3 C 0.090 3.910 4 C -0.166 4.166 5 C -0.322 4.322 6 C 0.376 3.624 7 O -0.434 6.434 8 N -0.353 5.353 9 C 0.005 3.995 10 C -0.143 4.143 11 C -0.015 4.015 12 C -0.576 4.576 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.207 1.207 20 S 0.482 5.518 21 N -0.365 5.365 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.079 0.921 25 H 0.200 0.800 26 H 0.251 0.749 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.000 -11.862 0.005 25.879 hybrid contribution 1.084 -0.315 0.001 1.129 sum -21.916 -12.177 0.007 25.072 Atomic orbital electron populations 1.23259 0.74956 1.05640 1.02587 1.86325 1.24727 1.21903 1.87931 1.19896 0.89725 0.85676 0.95740 1.20888 0.92681 0.98732 1.04335 1.25778 0.98839 0.98669 1.08948 1.16892 0.85806 0.82937 0.76798 1.90844 1.48095 1.53505 1.50985 1.45839 1.10100 1.06045 1.73288 1.21432 0.80383 0.95794 1.01867 1.21642 0.98586 0.91591 1.02483 1.18950 0.92000 0.95211 0.95334 1.21716 0.92719 0.93068 1.50115 0.91511 1.25994 0.95518 1.03675 0.94932 1.70110 0.98080 1.37456 1.51870 0.85399 0.78675 0.79426 0.77530 1.18203 1.20718 1.20707 1.84850 0.88181 1.10684 1.68134 1.76384 1.27334 1.01565 1.31221 0.92053 0.85098 0.92059 0.79981 0.74948 0.92006 0.91998 0.91101 0.91096 0.98688 0.98687 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.43 113.37 1.18 1.53 16 2 O -0.30 -5.52 10.52 -93.19 -0.98 -6.50 16 3 C 0.30 6.21 7.36 84.75 0.62 6.83 16 4 C -0.13 -2.73 10.09 22.06 0.22 -2.51 16 5 C -0.19 -4.26 6.74 24.55 0.17 -4.09 16 6 C 0.59 16.54 7.80 86.57 0.68 17.21 16 7 O -0.56 -19.77 16.95 -4.12 -0.07 -19.84 16 8 N -0.70 -18.22 5.55 -466.68 -2.59 -20.81 16 9 C 0.13 4.17 5.67 86.38 0.49 4.66 16 10 C -0.11 -3.79 5.27 30.60 0.16 -3.63 16 11 C 0.02 1.14 4.97 29.85 0.15 1.28 16 12 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 13 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 16 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 S 0.33 6.00 23.27 -56.49 -1.31 4.68 16 21 N -0.52 -10.73 11.03 -175.21 -1.93 -12.66 16 22 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 23 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 25 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 26 H 0.41 8.29 7.83 -92.71 -0.73 7.56 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -67.87 309.56 0.19 -67.68 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.40 Total: 5.62 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.37 Total: -7.44 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -4.24 Total: -89.35 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.05 Total: -26.34 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.31 Total: 4.68 kcal Total: -67.87 0.19 -67.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598681720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.665 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds