Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00107 * 2 1 4 4 C 1.37567 * 120.82743 * 180.26816 * 3 2 1 5 5 C 1.38040 * 114.25037 * 180.24083 * 4 3 2 6 6 C 1.47116 * 127.75724 * 179.80666 * 5 4 3 7 7 O 1.21631 * 120.00030 * 352.61295 * 6 5 4 8 8 N 1.34779 * 119.99993 * 172.61574 * 6 5 4 9 9 C 1.46506 * 120.00006 * 2.02991 * 8 6 5 10 10 C 1.46502 * 120.00106 * 182.02659 * 8 6 5 11 11 H 1.08996 * 109.47218 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.46997 * 239.99999 * 10 8 6 13 13 C 1.50701 * 109.46824 * 120.00195 * 10 8 6 14 14 H 1.08001 * 120.00180 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99785 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99687 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47205 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47269 * 119.99906 * 17 15 13 20 20 H 1.48500 * 109.47363 * 240.00043 * 17 15 13 21 21 S 1.77231 * 104.48022 * 359.53995 * 5 4 3 22 22 N 1.30358 * 120.82894 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47196 * 300.00716 * 1 2 3 25 25 H 1.09000 * 109.47232 * 60.00062 * 1 2 3 26 26 H 1.07998 * 122.87469 * 0.08109 * 4 3 2 27 27 H 1.08995 * 109.47539 * 83.79570 * 9 8 6 28 28 H 1.09009 * 109.46728 * 323.80114 * 9 8 6 29 29 H 1.08998 * 109.47490 * 203.80576 * 9 8 6 30 30 H 1.09003 * 109.47031 * 59.99876 * 12 10 8 31 31 H 1.08995 * 109.46793 * 180.02562 * 12 10 8 32 32 H 1.09006 * 109.47440 * 300.00119 * 12 10 8 33 33 H 0.97006 * 119.99608 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4188 1.3032 -0.0055 5 6 3.9006 2.5968 0.0005 6 6 5.3049 3.0351 0.0009 7 8 6.1969 2.2184 0.1310 8 7 5.6032 4.3416 -0.1427 9 6 4.5280 5.3304 -0.2547 10 6 7.0026 4.7729 -0.1869 11 1 7.6538 3.9044 -0.0887 12 6 7.2731 5.7451 0.9632 13 6 7.2752 5.4601 -1.5001 14 1 6.4852 5.5646 -2.2291 15 6 8.5334 5.9544 -1.7714 16 7 9.4955 5.8266 -0.8838 17 14 8.8715 6.8055 -3.3994 18 1 7.6320 6.8203 -4.2171 19 1 9.3137 8.2005 -3.1463 20 1 9.9376 6.0730 -4.1289 21 16 2.4471 3.6110 -0.0004 22 7 1.3522 2.3148 -0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 4.0643 0.4373 -0.0113 27 1 4.1833 5.6069 0.7417 28 1 3.6995 4.9038 -0.8203 29 1 4.9009 6.2161 -0.7690 30 1 7.0758 5.2481 1.9131 31 1 8.3141 6.0664 0.9301 32 1 6.6218 6.6138 0.8656 33 1 10.3808 6.1741 -1.0748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598690067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -15.437448 kcal Electronic energy + Delta-G solvation = -18394.704627 eV Core-core repulsion = 15355.680822 eV Total energy + Delta-G solvation = -3039.023805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12567 -39.18906 -36.45853 -35.46262 -33.08883 -31.25790 -29.48390 -28.03872 -26.53152 -25.33357 -24.72745 -22.05976 -20.21732 -18.96423 -18.04009 -17.55582 -16.57332 -16.26111 -15.84754 -15.57998 -14.81474 -14.61962 -14.54452 -13.58382 -13.35973 -13.13908 -12.68867 -12.66376 -12.18962 -11.92984 -11.71220 -11.35179 -11.19809 -11.11356 -10.91099 -10.79331 -10.38815 -10.30940 -10.25429 -9.56550 -9.43926 -9.26175 -8.52131 -8.33351 -7.81010 -6.15914 -4.24796 0.30914 1.26432 1.66384 2.35096 2.99059 3.22129 3.30637 3.33062 3.51819 3.72536 4.32963 4.67531 4.99007 5.03929 5.09784 5.16218 5.33167 5.41044 5.44188 5.75284 5.78133 6.08345 6.22222 6.65316 6.71748 6.93189 7.02184 7.20290 7.36408 7.60841 7.89148 8.04873 8.27259 8.61080 8.81736 9.42041 10.89540 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.004562 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.325449 B = 6136.565582 C = 6212.504851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.306 3.694 4 C -0.143 4.143 5 C -0.163 4.163 6 C 0.575 3.425 7 O -0.526 6.526 8 N -0.575 5.575 9 C 0.070 3.930 10 C 0.258 3.742 11 H 0.068 0.932 12 C -0.148 4.148 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.900 3.100 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 S 0.300 5.700 22 N -0.550 5.550 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.175 0.825 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.014 0.986 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 -4.172 2.286 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.092 3.908 4 C -0.180 4.180 5 C -0.295 4.295 6 C 0.359 3.641 7 O -0.404 6.404 8 N -0.306 5.306 9 C -0.077 4.077 10 C 0.159 3.841 11 H 0.086 0.914 12 C -0.206 4.206 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 S 0.451 5.549 22 N -0.389 5.389 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.192 0.808 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.033 0.967 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.794 -3.232 2.388 16.297 hybrid contribution 0.814 -0.845 -0.913 1.487 sum -14.979 -4.077 1.475 15.594 Atomic orbital electron populations 1.22904 0.77158 1.03186 1.02386 1.86281 1.22649 1.23273 1.88454 1.19851 0.89690 0.85142 0.96105 1.20709 0.92307 0.98683 1.06343 1.26422 0.99831 0.97267 1.05979 1.16771 0.84663 0.83609 0.79053 1.90809 1.46528 1.52400 1.50652 1.48230 1.10142 1.04288 1.67930 1.21928 0.89329 0.95040 1.01363 1.19122 0.74299 0.95713 0.94977 0.91403 1.22110 1.04588 0.98428 0.95485 1.21325 0.96585 1.38032 1.01024 0.91941 1.24885 0.95806 0.95754 0.97166 1.69886 1.02459 1.45660 1.34278 0.86407 0.78427 0.79078 0.83302 1.19726 1.20855 1.20836 1.85372 0.89514 1.10596 1.69390 1.76259 1.29560 1.02545 1.30548 0.88330 0.92343 0.92314 0.80791 0.92360 0.92670 0.87810 0.96715 0.88508 0.94894 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.43 101.05 1.05 1.42 16 2 O -0.30 -3.93 10.51 -19.61 -0.21 -4.14 16 3 C 0.31 4.49 7.36 -18.42 -0.14 4.35 16 4 C -0.14 -2.23 10.10 -39.90 -0.40 -2.63 16 5 C -0.16 -2.74 6.46 -36.05 -0.23 -2.98 16 6 C 0.58 11.90 7.66 -12.66 -0.10 11.80 16 7 O -0.53 -12.68 16.29 5.25 0.09 -12.60 16 8 N -0.58 -11.87 2.75 -176.64 -0.49 -12.36 16 9 C 0.07 1.13 8.01 59.85 0.48 1.61 16 10 C 0.26 6.30 2.63 -69.08 -0.18 6.12 16 11 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 12 C -0.15 -3.35 8.97 37.16 0.33 -3.02 16 13 C -0.53 -13.70 7.95 -34.44 -0.27 -13.98 16 14 H 0.06 1.58 7.44 -52.49 -0.39 1.19 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 17 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 S 0.30 4.19 19.22 -107.50 -2.07 2.12 16 22 N -0.55 -8.06 11.03 29.19 0.32 -7.74 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 27 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 28 H 0.06 0.80 4.43 -23.69 -0.11 0.69 16 29 H 0.10 1.70 7.12 -51.93 -0.37 1.33 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -29.72 293.40 -5.47 -35.19 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.60 Total: -1.05 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 0.45 Total: 4.36 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.46 Total: -43.61 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.12 Total: -16.74 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.07 Total: 2.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.72 -5.47 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598690067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.753 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds