Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00107 * 2 1 4 4 C 1.37567 * 120.82743 * 180.26816 * 3 2 1 5 5 C 1.38040 * 114.25037 * 180.24083 * 4 3 2 6 6 C 1.47116 * 127.75724 * 179.80666 * 5 4 3 7 7 O 1.21631 * 120.00030 * 352.61295 * 6 5 4 8 8 N 1.34779 * 119.99993 * 172.61574 * 6 5 4 9 9 C 1.46506 * 120.00006 * 2.02991 * 8 6 5 10 10 C 1.46502 * 120.00106 * 182.02659 * 8 6 5 11 11 H 1.08996 * 109.47218 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.46997 * 239.99999 * 10 8 6 13 13 C 1.50701 * 109.46824 * 120.00195 * 10 8 6 14 14 H 1.08001 * 120.00180 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99785 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99687 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47205 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47269 * 119.99906 * 17 15 13 20 20 H 1.48500 * 109.47363 * 240.00043 * 17 15 13 21 21 S 1.77231 * 104.48022 * 359.53995 * 5 4 3 22 22 N 1.30358 * 120.82894 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47196 * 300.00716 * 1 2 3 25 25 H 1.09000 * 109.47232 * 60.00062 * 1 2 3 26 26 H 1.07998 * 122.87469 * 0.08109 * 4 3 2 27 27 H 1.08995 * 109.47539 * 83.79570 * 9 8 6 28 28 H 1.09009 * 109.46728 * 323.80114 * 9 8 6 29 29 H 1.08998 * 109.47490 * 203.80576 * 9 8 6 30 30 H 1.09003 * 109.47031 * 59.99876 * 12 10 8 31 31 H 1.08995 * 109.46793 * 180.02562 * 12 10 8 32 32 H 1.09006 * 109.47440 * 300.00119 * 12 10 8 33 33 H 0.97006 * 119.99608 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4188 1.3032 -0.0055 5 6 3.9006 2.5968 0.0005 6 6 5.3049 3.0351 0.0009 7 8 6.1969 2.2184 0.1310 8 7 5.6032 4.3416 -0.1427 9 6 4.5280 5.3304 -0.2547 10 6 7.0026 4.7729 -0.1869 11 1 7.6538 3.9044 -0.0887 12 6 7.2731 5.7451 0.9632 13 6 7.2752 5.4601 -1.5001 14 1 6.4852 5.5646 -2.2291 15 6 8.5334 5.9544 -1.7714 16 7 9.4955 5.8266 -0.8838 17 14 8.8715 6.8055 -3.3994 18 1 7.6320 6.8203 -4.2171 19 1 9.3137 8.2005 -3.1463 20 1 9.9376 6.0730 -4.1289 21 16 2.4471 3.6110 -0.0004 22 7 1.3522 2.3148 -0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 4.0643 0.4373 -0.0113 27 1 4.1833 5.6069 0.7417 28 1 3.6995 4.9038 -0.8203 29 1 4.9009 6.2161 -0.7690 30 1 7.0758 5.2481 1.9131 31 1 8.3141 6.0664 0.9301 32 1 6.6218 6.6138 0.8656 33 1 10.3808 6.1741 -1.0748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598690067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -36.737130 kcal Electronic energy + Delta-G solvation = -18395.628251 eV Core-core repulsion = 15355.680822 eV Total energy + Delta-G solvation = -3039.947429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29584 -40.71927 -37.67523 -37.09688 -34.94340 -32.68005 -31.16932 -28.96179 -27.94791 -27.29736 -26.04960 -23.46268 -21.76919 -20.31448 -19.44407 -18.74495 -18.39176 -17.45876 -17.27432 -17.03954 -16.35253 -16.30340 -15.65563 -15.04541 -14.59655 -14.55890 -14.33416 -14.09633 -13.57597 -13.32861 -13.03753 -12.94427 -12.75614 -12.69680 -12.43974 -12.20904 -12.10799 -12.06695 -11.59457 -11.20387 -11.04008 -10.83050 -10.52247 -9.59968 -9.32338 -8.14708 -6.31053 -0.96963 0.05227 0.51217 1.13464 1.44139 1.46562 1.56928 1.77676 2.00351 2.34145 2.47654 3.14688 3.35799 3.76058 4.12071 4.16587 4.33952 4.38081 4.52446 4.56613 4.72575 4.75174 4.88559 4.91244 5.03378 5.06808 5.43505 5.48843 5.64758 5.98521 6.00827 6.12999 6.54358 6.74637 7.05703 7.40464 8.90288 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.004562 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.325449 B = 6136.565582 C = 6212.504851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.305 3.695 4 C -0.136 4.136 5 C -0.192 4.192 6 C 0.572 3.428 7 O -0.575 6.575 8 N -0.581 5.581 9 C 0.065 3.935 10 C 0.262 3.738 11 H 0.018 0.982 12 C -0.134 4.134 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 0.965 3.035 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.287 1.287 21 S 0.358 5.642 22 N -0.551 5.551 23 H 0.130 0.870 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.175 0.825 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 -3.468 1.754 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.091 3.909 4 C -0.174 4.174 5 C -0.324 4.324 6 C 0.358 3.642 7 O -0.457 6.457 8 N -0.311 5.311 9 C -0.080 4.080 10 C 0.161 3.839 11 H 0.036 0.964 12 C -0.193 4.193 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.790 3.210 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.214 1.214 21 S 0.509 5.491 22 N -0.391 5.391 23 H 0.148 0.852 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.192 0.808 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.330 -2.504 1.858 18.593 hybrid contribution 1.465 -1.132 -0.722 1.987 sum -16.865 -3.636 1.136 17.290 Atomic orbital electron populations 1.23215 0.75102 1.05423 1.02482 1.86290 1.24652 1.22347 1.88116 1.19721 0.89325 0.85733 0.96076 1.20809 0.93013 0.98439 1.05177 1.25907 0.98961 0.98874 1.08614 1.17168 0.85945 0.83117 0.77970 1.90769 1.48572 1.53557 1.52777 1.48163 1.09810 1.05320 1.67779 1.22186 0.88460 0.93917 1.03442 1.18744 0.75931 0.93866 0.95364 0.96436 1.21909 1.03409 0.98727 0.95258 1.21580 0.96867 1.37843 1.01643 0.91620 1.25685 0.95658 0.96449 1.00295 1.70021 1.02801 1.46510 1.36015 0.85409 0.78201 0.78093 0.79318 1.18795 1.20015 1.21359 1.85032 0.86859 1.09149 1.68010 1.76229 1.29705 1.02844 1.30316 0.85171 0.92142 0.92214 0.80755 0.89515 0.90840 0.87939 0.95817 0.91018 0.92855 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.43 113.37 1.18 1.70 16 2 O -0.31 -7.41 10.51 -93.10 -0.98 -8.39 16 3 C 0.30 8.35 7.36 84.75 0.62 8.97 16 4 C -0.14 -4.12 10.10 22.06 0.22 -3.89 16 5 C -0.19 -6.30 6.46 24.56 0.16 -6.14 16 6 C 0.57 24.02 7.66 86.57 0.66 24.68 16 7 O -0.58 -29.05 16.29 -4.13 -0.07 -29.12 16 8 N -0.58 -23.96 2.75 -831.01 -2.29 -26.25 16 9 C 0.07 1.96 8.01 127.77 1.02 2.98 16 10 C 0.26 13.09 2.63 44.25 0.12 13.21 16 11 H 0.02 1.05 6.90 -2.39 -0.02 1.04 16 12 C -0.13 -6.15 8.97 71.98 0.65 -5.51 16 13 C -0.54 -28.08 7.95 25.60 0.20 -27.88 16 14 H 0.07 3.29 7.44 -2.91 -0.02 3.27 16 15 C 0.02 1.01 5.30 84.66 0.45 1.46 16 16 N -0.91 -50.92 11.32 21.45 0.24 -50.68 16 17 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 21 S 0.36 9.02 19.22 -56.49 -1.09 7.94 16 22 N -0.55 -14.67 11.03 -175.22 -1.93 -16.60 16 23 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 25 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 26 H 0.18 5.15 8.06 -2.91 -0.02 5.12 16 27 H 0.09 2.13 8.00 -2.39 -0.02 2.11 16 28 H 0.07 1.93 4.43 -20.33 -0.09 1.84 16 29 H 0.10 3.15 7.12 -2.39 -0.02 3.13 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 32 H 0.05 2.16 7.67 -2.38 -0.02 2.14 16 33 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -65.29 293.40 2.26 -63.03 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.29 Total: 9.60 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.98 Total: -93.53 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.05 Total: -37.51 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -1.09 Total: 7.94 kcal Total: -65.29 2.26 -63.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598690067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds