Wall clock time and date at job start Mon Mar 30 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35964 * 117.00272 * 2 1 4 4 C 1.37567 * 120.82507 * 180.29598 * 3 2 1 5 5 C 1.38044 * 114.24317 * 180.21865 * 4 3 2 6 6 C 1.47116 * 127.75172 * 179.80436 * 5 4 3 7 7 O 1.21629 * 120.00629 * 6.70167 * 6 5 4 8 8 N 1.34784 * 119.99441 * 186.70032 * 6 5 4 9 9 C 1.46498 * 120.00230 * 5.76636 * 8 6 5 10 10 C 1.46503 * 119.99761 * 185.76153 * 8 6 5 11 11 H 1.09005 * 109.47265 * 0.02562 * 10 8 6 12 12 C 1.52998 * 109.46769 * 119.99833 * 10 8 6 13 13 C 1.50697 * 109.47071 * 240.00121 * 10 8 6 14 14 H 1.07996 * 120.00493 * 0.02562 * 13 10 8 15 15 C 1.37883 * 119.99569 * 180.02562 * 13 10 8 16 16 N 1.31509 * 120.00264 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99524 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46757 * 269.99675 * 17 15 13 19 19 H 1.48496 * 109.47210 * 29.99867 * 17 15 13 20 20 H 1.48505 * 109.47018 * 150.00194 * 17 15 13 21 21 S 1.77227 * 104.48541 * 359.54651 * 5 4 3 22 22 N 1.30366 * 120.82271 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47101 * 59.99136 * 1 2 3 24 24 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46461 * 299.99630 * 1 2 3 26 26 H 1.07997 * 122.87932 * 0.04505 * 4 3 2 27 27 H 1.09007 * 109.46667 * 275.50141 * 9 8 6 28 28 H 1.09000 * 109.47234 * 35.49690 * 9 8 6 29 29 H 1.08993 * 109.47221 * 155.50565 * 9 8 6 30 30 H 1.09003 * 109.47199 * 179.97438 * 12 10 8 31 31 H 1.08994 * 109.47746 * 300.00024 * 12 10 8 32 32 H 1.09001 * 109.47025 * 60.00691 * 12 10 8 33 33 H 0.97003 * 120.00469 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 3.4190 1.3031 -0.0061 5 6 3.9006 2.5968 -0.0005 6 6 5.3050 3.0350 -0.0006 7 8 6.1970 2.2182 -0.1291 8 7 5.6031 4.3418 0.1416 9 6 4.5396 5.3094 0.4224 10 6 6.9907 4.7944 0.0154 11 1 7.6343 3.9396 -0.1926 12 6 7.0961 5.8023 -1.1309 13 6 7.4244 5.4491 1.3016 14 1 6.7356 5.5205 2.1303 15 6 8.7008 5.9570 1.4203 16 7 9.5395 5.8705 0.4110 17 14 9.2386 6.7679 3.0149 18 1 8.9333 8.2202 2.9591 19 1 8.5106 6.1524 4.1533 20 1 10.6996 6.5760 3.1996 21 16 2.4472 3.6110 -0.0008 22 7 1.3522 2.3149 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 4.0644 0.4373 -0.0118 27 1 4.0722 5.6172 -0.5131 28 1 3.7915 4.8498 1.0683 29 1 4.9638 6.1811 0.9205 30 1 8.1284 6.1395 -1.2245 31 1 6.7824 5.3288 -2.0611 32 1 6.4525 6.6572 -0.9232 33 1 10.4376 6.2275 0.4947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598690068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:10 Heat of formation + Delta-G solvation = -16.455553 kcal Electronic energy + Delta-G solvation = -18387.541726 eV Core-core repulsion = 15348.473773 eV Total energy + Delta-G solvation = -3039.067954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14456 -39.17826 -36.47107 -35.45720 -33.07056 -31.25950 -29.48207 -28.05175 -26.50059 -25.33122 -24.72460 -22.06583 -20.20290 -18.96771 -18.03256 -17.56003 -16.57291 -16.27514 -15.83043 -15.59004 -14.79611 -14.63743 -14.51540 -13.55489 -13.36658 -13.08037 -12.68409 -12.66908 -12.19456 -11.89950 -11.70848 -11.36679 -11.20533 -11.10634 -10.88994 -10.79205 -10.46635 -10.35692 -10.23671 -9.58568 -9.43833 -9.25035 -8.51181 -8.33129 -7.80300 -6.14622 -4.23305 0.29407 1.25589 1.65120 2.33029 2.98210 3.23274 3.31012 3.33587 3.51505 3.72799 4.34011 4.67157 4.98564 5.03809 5.08606 5.17448 5.31975 5.41611 5.46184 5.75710 5.77983 6.07900 6.22536 6.65340 6.71867 6.93177 7.00158 7.21171 7.36965 7.61616 7.89743 8.06211 8.28353 8.62229 8.82574 9.43289 10.90840 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.004500 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.580493 B = 6220.867971 C = 6292.076929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.299 6.299 3 C 0.306 3.694 4 C -0.145 4.145 5 C -0.162 4.162 6 C 0.575 3.425 7 O -0.524 6.524 8 N -0.576 5.576 9 C 0.066 3.934 10 C 0.258 3.742 11 H 0.068 0.932 12 C -0.148 4.148 13 C -0.530 4.530 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.285 1.285 21 S 0.298 5.702 22 N -0.545 5.545 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.175 0.825 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.032 0.968 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.408 -4.350 -1.306 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.092 3.908 4 C -0.182 4.182 5 C -0.294 4.294 6 C 0.359 3.641 7 O -0.402 6.402 8 N -0.307 5.307 9 C -0.080 4.080 10 C 0.159 3.841 11 H 0.085 0.915 12 C -0.206 4.206 13 C -0.569 4.569 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.210 1.210 21 S 0.449 5.551 22 N -0.385 5.385 23 H 0.077 0.923 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.192 0.808 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.107 -3.397 -1.436 16.524 hybrid contribution 0.915 -0.860 0.868 1.527 sum -15.192 -4.258 -0.568 15.788 Atomic orbital electron populations 1.22914 0.77123 1.03229 1.02405 1.86287 1.22674 1.23178 1.88434 1.19864 0.89713 0.85145 0.96058 1.20718 0.92280 0.98716 1.06451 1.26450 0.99908 0.97226 1.05804 1.16770 0.84628 0.83616 0.79134 1.90811 1.46491 1.52233 1.50704 1.48212 1.11222 1.04773 1.66451 1.21892 0.90152 0.95417 1.00553 1.19107 0.74645 0.95241 0.95081 0.91467 1.22120 1.04329 0.98538 0.95660 1.21279 0.98366 1.38676 0.98556 0.92006 1.24881 0.96196 0.95711 0.96813 1.69865 1.06484 1.45517 1.30504 0.86462 0.77954 0.79487 0.83323 1.20536 1.19854 1.21044 1.85322 0.89618 1.10908 1.69252 1.76279 1.29015 1.02269 1.30890 0.92319 0.88298 0.92290 0.80763 0.92588 0.92301 0.87903 0.88477 0.96774 0.94870 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.43 101.05 1.05 1.41 16 2 O -0.30 -3.88 10.51 -19.63 -0.21 -4.09 16 3 C 0.31 4.44 7.36 -18.42 -0.14 4.31 16 4 C -0.14 -2.23 10.10 -39.90 -0.40 -2.63 16 5 C -0.16 -2.71 6.40 -36.05 -0.23 -2.94 16 6 C 0.57 11.89 7.65 -12.66 -0.10 11.79 16 7 O -0.52 -12.69 16.30 5.25 0.09 -12.61 16 8 N -0.58 -11.91 2.75 -176.65 -0.49 -12.40 16 9 C 0.07 1.06 7.86 59.85 0.47 1.53 16 10 C 0.26 6.33 2.62 -69.08 -0.18 6.15 16 11 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 12 C -0.15 -3.36 8.97 37.16 0.33 -3.03 16 13 C -0.53 -13.75 7.95 -34.44 -0.27 -14.03 16 14 H 0.06 1.57 7.43 -52.49 -0.39 1.18 16 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -24.23 11.32 55.43 0.63 -23.60 16 17 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 S 0.30 4.14 19.24 -107.50 -2.07 2.07 16 22 N -0.54 -7.90 11.03 29.19 0.32 -7.58 16 23 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 26 H 0.18 2.55 8.06 -52.49 -0.42 2.12 16 27 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 28 H 0.06 0.84 5.17 -30.63 -0.16 0.68 16 29 H 0.10 1.70 7.11 -51.93 -0.37 1.33 16 30 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -29.80 293.58 -5.52 -35.31 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.63 Total: -1.16 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.44 Total: 4.24 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.46 Total: -43.58 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.12 Total: -16.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.07 Total: 2.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.80 -5.52 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598690068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds