Wall clock time and date at job start Mon Mar 30 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35964 * 117.00272 * 2 1 4 4 C 1.37567 * 120.82507 * 180.29598 * 3 2 1 5 5 C 1.38044 * 114.24317 * 180.21865 * 4 3 2 6 6 C 1.47116 * 127.75172 * 179.80436 * 5 4 3 7 7 O 1.21629 * 120.00629 * 6.70167 * 6 5 4 8 8 N 1.34784 * 119.99441 * 186.70032 * 6 5 4 9 9 C 1.46498 * 120.00230 * 5.76636 * 8 6 5 10 10 C 1.46503 * 119.99761 * 185.76153 * 8 6 5 11 11 H 1.09005 * 109.47265 * 0.02562 * 10 8 6 12 12 C 1.52998 * 109.46769 * 119.99833 * 10 8 6 13 13 C 1.50697 * 109.47071 * 240.00121 * 10 8 6 14 14 H 1.07996 * 120.00493 * 0.02562 * 13 10 8 15 15 C 1.37883 * 119.99569 * 180.02562 * 13 10 8 16 16 N 1.31509 * 120.00264 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99524 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46757 * 269.99675 * 17 15 13 19 19 H 1.48496 * 109.47210 * 29.99867 * 17 15 13 20 20 H 1.48505 * 109.47018 * 150.00194 * 17 15 13 21 21 S 1.77227 * 104.48541 * 359.54651 * 5 4 3 22 22 N 1.30366 * 120.82271 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47101 * 59.99136 * 1 2 3 24 24 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46461 * 299.99630 * 1 2 3 26 26 H 1.07997 * 122.87932 * 0.04505 * 4 3 2 27 27 H 1.09007 * 109.46667 * 275.50141 * 9 8 6 28 28 H 1.09000 * 109.47234 * 35.49690 * 9 8 6 29 29 H 1.08993 * 109.47221 * 155.50565 * 9 8 6 30 30 H 1.09003 * 109.47199 * 179.97438 * 12 10 8 31 31 H 1.08994 * 109.47746 * 300.00024 * 12 10 8 32 32 H 1.09001 * 109.47025 * 60.00691 * 12 10 8 33 33 H 0.97003 * 120.00469 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 3.4190 1.3031 -0.0061 5 6 3.9006 2.5968 -0.0005 6 6 5.3050 3.0350 -0.0006 7 8 6.1970 2.2182 -0.1291 8 7 5.6031 4.3418 0.1416 9 6 4.5396 5.3094 0.4224 10 6 6.9907 4.7944 0.0154 11 1 7.6343 3.9396 -0.1926 12 6 7.0961 5.8023 -1.1309 13 6 7.4244 5.4491 1.3016 14 1 6.7356 5.5205 2.1303 15 6 8.7008 5.9570 1.4203 16 7 9.5395 5.8705 0.4110 17 14 9.2386 6.7679 3.0149 18 1 8.9333 8.2202 2.9591 19 1 8.5106 6.1524 4.1533 20 1 10.6996 6.5760 3.1996 21 16 2.4472 3.6110 -0.0008 22 7 1.3522 2.3149 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 4.0644 0.4373 -0.0118 27 1 4.0722 5.6172 -0.5131 28 1 3.7915 4.8498 1.0683 29 1 4.9638 6.1811 0.9205 30 1 8.1284 6.1395 -1.2245 31 1 6.7824 5.3288 -2.0611 32 1 6.4525 6.6572 -0.9232 33 1 10.4376 6.2275 0.4947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598690068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:10 Heat of formation + Delta-G solvation = -37.830502 kcal Electronic energy + Delta-G solvation = -18388.468614 eV Core-core repulsion = 15348.473773 eV Total energy + Delta-G solvation = -3039.994841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30180 -40.71231 -37.67544 -37.09872 -34.93250 -32.67041 -31.17357 -28.96472 -27.91949 -27.29601 -26.04547 -23.46336 -21.75043 -20.31630 -19.42248 -18.74434 -18.40725 -17.45176 -17.27326 -17.03191 -16.40770 -16.24095 -15.64427 -15.01514 -14.59220 -14.47840 -14.33047 -14.13031 -13.57241 -13.29256 -13.03048 -12.94429 -12.75346 -12.67962 -12.45200 -12.21616 -12.12874 -12.06746 -11.66308 -11.22037 -11.04571 -10.83867 -10.51403 -9.58198 -9.32692 -8.14257 -6.30480 -0.97663 0.05368 0.51144 1.12404 1.44621 1.46603 1.55778 1.78828 1.99125 2.34201 2.47778 3.14968 3.36792 3.76073 4.13524 4.18246 4.33707 4.38135 4.52483 4.56782 4.72768 4.75577 4.89729 4.91374 5.03221 5.05432 5.44092 5.49249 5.64854 5.98433 6.00279 6.13732 6.55461 6.74909 7.06274 7.40822 8.90468 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.004500 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.580493 B = 6220.867971 C = 6292.076929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.305 3.695 4 C -0.137 4.137 5 C -0.191 4.191 6 C 0.572 3.428 7 O -0.575 6.575 8 N -0.582 5.582 9 C 0.061 3.939 10 C 0.262 3.738 11 H 0.017 0.983 12 C -0.134 4.134 13 C -0.541 4.541 14 H 0.064 0.936 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.288 1.288 21 S 0.356 5.644 22 N -0.545 5.545 23 H 0.060 0.940 24 H 0.130 0.870 25 H 0.060 0.940 26 H 0.175 0.825 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -3.668 -0.654 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.092 3.908 4 C -0.175 4.175 5 C -0.323 4.323 6 C 0.358 3.642 7 O -0.456 6.456 8 N -0.311 5.311 9 C -0.084 4.084 10 C 0.161 3.839 11 H 0.035 0.965 12 C -0.193 4.193 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.181 4.181 16 N -0.554 5.554 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.213 1.213 21 S 0.508 5.492 22 N -0.386 5.386 23 H 0.079 0.921 24 H 0.148 0.852 25 H 0.079 0.921 26 H 0.193 0.807 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.588 -2.690 -0.782 18.797 hybrid contribution 1.544 -1.140 0.643 2.024 sum -17.044 -3.830 -0.139 17.469 Atomic orbital electron populations 1.23225 0.75066 1.05458 1.02513 1.86297 1.24678 1.22253 1.88094 1.19728 0.89334 0.85737 0.96036 1.20815 0.92996 0.98454 1.05244 1.25915 0.98987 0.98850 1.08516 1.17173 0.85941 0.83099 0.78006 1.90771 1.48578 1.53418 1.52860 1.48148 1.10858 1.05757 1.66384 1.22151 0.89343 0.94432 1.02453 1.18731 0.76260 0.93530 0.95363 0.96501 1.21913 1.03196 0.98703 0.95494 1.21545 0.98731 1.38535 0.99166 0.91749 1.25680 0.96287 0.96314 0.99793 1.70004 1.06731 1.46319 1.32302 0.85463 0.77105 0.79052 0.79441 1.19150 1.19645 1.21338 1.85000 0.86934 1.09443 1.67857 1.76248 1.29172 1.02571 1.30612 0.92140 0.85158 0.92142 0.80744 0.89792 0.90318 0.88114 0.90990 0.95730 0.92888 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.43 113.37 1.18 1.69 16 2 O -0.31 -7.30 10.51 -93.14 -0.98 -8.28 16 3 C 0.30 8.26 7.36 84.75 0.62 8.88 16 4 C -0.14 -4.11 10.10 22.06 0.22 -3.88 16 5 C -0.19 -6.23 6.40 24.56 0.16 -6.08 16 6 C 0.57 24.04 7.65 86.57 0.66 24.70 16 7 O -0.57 -29.15 16.30 -4.12 -0.07 -29.22 16 8 N -0.58 -24.06 2.75 -831.03 -2.29 -26.35 16 9 C 0.06 1.83 7.86 127.77 1.00 2.84 16 10 C 0.26 13.14 2.62 44.24 0.12 13.26 16 11 H 0.02 1.02 6.91 -2.38 -0.02 1.00 16 12 C -0.13 -6.15 8.97 71.98 0.65 -5.50 16 13 C -0.54 -28.31 7.95 25.60 0.20 -28.11 16 14 H 0.06 3.25 7.43 -2.91 -0.02 3.23 16 15 C 0.02 1.03 5.30 84.66 0.45 1.48 16 16 N -0.92 -51.09 11.32 21.45 0.24 -50.85 16 17 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 21 S 0.36 8.91 19.24 -56.49 -1.09 7.82 16 22 N -0.54 -14.34 11.03 -175.20 -1.93 -16.27 16 23 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 24 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 0.95 8.13 -2.38 -0.02 0.94 16 26 H 0.18 5.12 8.06 -2.91 -0.02 5.09 16 27 H 0.08 2.08 7.66 -2.38 -0.02 2.06 16 28 H 0.08 2.05 5.17 -15.93 -0.08 1.97 16 29 H 0.10 3.13 7.11 -2.39 -0.02 3.11 16 30 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 33 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -65.57 293.58 2.24 -63.33 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.06 Total: 6.75 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.27 Total: 9.27 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -3.98 Total: -93.47 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.05 Total: -37.50 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 8.91 SS G_CDS: -1.09 Total: 7.82 kcal Total: -65.57 2.24 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598690068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.496 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds