Wall clock time and date at job start Mon Mar 30 2020 00:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47263 * 119.99630 * 179.72408 * 13 12 11 16 16 C 1.35210 * 123.14313 * 179.72855 * 15 13 12 17 17 S 1.70937 * 108.83060 * 179.90595 * 16 15 13 18 18 C 1.70770 * 91.13055 * 0.30071 * 17 16 15 19 19 C 1.50691 * 124.72324 * 179.82445 * 18 17 16 20 20 O 1.42910 * 109.47206 * 270.00138 * 19 18 17 21 21 N 1.28654 * 110.55858 * 359.82367 * 18 17 16 22 22 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 24 24 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 25 25 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 26 26 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08007 * 125.58170 * 0.02562 * 16 15 13 31 31 H 1.09002 * 109.47528 * 29.99938 * 19 18 17 32 32 H 1.08995 * 109.47485 * 150.00199 * 19 18 17 33 33 H 0.96698 * 113.99796 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1555 -3.3393 0.0038 15 6 7.8559 -5.6522 0.0087 16 6 9.1697 -5.9718 0.0090 17 16 9.3234 -7.6742 0.0187 18 6 7.6260 -7.8613 0.0128 19 6 6.9085 -9.1865 0.0131 20 8 6.6867 -9.6084 -1.3341 21 7 7.0450 -6.7135 0.0081 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 3.6587 -3.1493 -0.8920 26 1 3.6579 -3.1512 0.8880 27 1 5.9150 -2.1234 0.8891 28 1 5.9149 -2.1217 -0.8909 29 1 5.4096 -4.7549 -0.0021 30 1 9.9880 -5.2669 0.0058 31 1 7.5162 -9.9286 0.5309 32 1 5.9510 -9.0811 0.5231 33 1 6.2284 -10.4565 -1.4102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:51 Heat of formation + Delta-G solvation = -53.182544 kcal Electronic energy + Delta-G solvation = -17309.188506 eV Core-core repulsion = 14268.527951 eV Total energy + Delta-G solvation = -3040.660555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64931 -38.80738 -37.15733 -35.54308 -33.28948 -31.72384 -31.31205 -27.94526 -27.54150 -25.05510 -22.68095 -21.40675 -20.54240 -19.88094 -18.70618 -18.06294 -17.00144 -16.45748 -15.92023 -15.64287 -15.36339 -14.95361 -14.66591 -14.21118 -13.86881 -13.61449 -13.44804 -12.69538 -12.51412 -12.25873 -11.99745 -11.89642 -11.06048 -10.87667 -10.70418 -10.36614 -10.19258 -10.01637 -9.98616 -9.79511 -9.63492 -9.33651 -9.20420 -8.82171 -8.53399 -6.04107 -4.02667 0.16279 0.85748 1.25650 1.70658 3.21341 3.31326 3.33107 3.40369 3.44884 3.53810 4.16865 4.46311 4.46435 4.73774 4.87659 4.93357 5.03720 5.29926 5.49959 5.64449 5.67593 6.03695 6.34813 6.47271 6.70124 6.81083 7.04639 7.10216 7.25535 7.38873 7.66192 7.78861 8.24831 8.53029 9.00096 9.58108 11.09197 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.003230 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.135275 B = 8665.501889 C = 9460.020040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.705 5.705 13 C 0.588 3.412 14 O -0.540 6.540 15 C 0.013 3.987 16 C -0.223 4.223 17 S 0.230 5.770 18 C 0.014 3.986 19 C 0.157 3.843 20 O -0.563 6.563 21 N -0.423 5.423 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.409 0.591 30 H 0.192 0.808 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.132 -21.576 1.029 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.354 5.354 13 C 0.370 3.630 14 O -0.417 6.417 15 C -0.122 4.122 16 C -0.365 4.365 17 S 0.487 5.513 18 C -0.265 4.265 19 C 0.075 3.925 20 O -0.369 6.369 21 N -0.140 5.140 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.245 0.755 30 H 0.209 0.791 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 20.043 -20.885 0.903 28.961 hybrid contribution -0.611 1.041 0.093 1.210 sum 19.432 -19.844 0.996 27.792 Atomic orbital electron populations 1.69912 1.06315 1.26933 1.51093 1.25028 0.94748 0.99225 0.94492 0.86773 0.80405 0.83518 0.78585 1.20243 1.21384 1.18887 1.21104 0.89310 0.94538 1.50981 0.90975 1.19506 0.97287 0.91409 0.96672 1.21714 0.90426 1.01070 1.01951 1.21745 0.96389 0.80704 1.02141 1.46010 1.06278 1.10524 1.72633 1.17053 0.83088 0.85643 0.77183 1.90812 1.55725 1.44077 1.51131 1.20537 0.89283 0.94285 1.08143 1.26706 1.01778 1.01397 1.06627 1.82752 1.06788 0.98380 1.63426 1.26681 0.95512 0.97543 1.06780 1.20383 0.99122 0.88002 0.84945 1.86534 1.81831 1.43447 1.25127 1.66879 1.37235 0.97309 1.12610 0.92713 0.96271 0.96704 0.91981 0.91980 0.91485 0.91478 0.75524 0.79063 0.91025 0.89992 0.76123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.11 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.70 -11.28 5.55 -61.43 -0.34 -11.62 16 13 C 0.59 9.66 7.80 -12.59 -0.10 9.56 16 14 O -0.54 -10.24 16.71 5.25 0.09 -10.16 16 15 C 0.01 0.18 6.70 -84.52 -0.57 -0.39 16 16 C -0.22 -2.42 10.62 29.65 0.31 -2.11 16 17 S 0.23 1.78 22.92 -107.50 -2.46 -0.68 16 18 C 0.01 0.14 6.97 -13.61 -0.09 0.05 16 19 C 0.16 1.01 7.62 36.00 0.27 1.29 16 20 O -0.56 -4.08 13.64 -35.23 -0.48 -4.57 16 21 N -0.42 -5.43 10.12 -8.51 -0.09 -5.52 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 24 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.41 6.00 7.99 -40.82 -0.33 5.68 16 30 H 0.19 1.85 8.03 -52.48 -0.42 1.42 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.39 0.75 9.12 45.56 0.42 1.17 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -35.78 306.00 -6.67 -42.45 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.22 Total: 1.27 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.88 Total: -5.81 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.35 Total: -44.46 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.39 Total: -14.72 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.46 Total: -0.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.78 -6.67 -42.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.734 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds