Wall clock time and date at job start Mon Mar 30 2020 00:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47263 * 119.99630 * 179.72408 * 13 12 11 16 16 C 1.35210 * 123.14313 * 179.72855 * 15 13 12 17 17 S 1.70937 * 108.83060 * 179.90595 * 16 15 13 18 18 C 1.70770 * 91.13055 * 0.30071 * 17 16 15 19 19 C 1.50691 * 124.72324 * 179.82445 * 18 17 16 20 20 O 1.42910 * 109.47206 * 270.00138 * 19 18 17 21 21 N 1.28654 * 110.55858 * 359.82367 * 18 17 16 22 22 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 24 24 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 25 25 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 26 26 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08007 * 125.58170 * 0.02562 * 16 15 13 31 31 H 1.09002 * 109.47528 * 29.99938 * 19 18 17 32 32 H 1.08995 * 109.47485 * 150.00199 * 19 18 17 33 33 H 0.96698 * 113.99796 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1555 -3.3393 0.0038 15 6 7.8559 -5.6522 0.0087 16 6 9.1697 -5.9718 0.0090 17 16 9.3234 -7.6742 0.0187 18 6 7.6260 -7.8613 0.0128 19 6 6.9085 -9.1865 0.0131 20 8 6.6867 -9.6084 -1.3341 21 7 7.0450 -6.7135 0.0081 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 3.6587 -3.1493 -0.8920 26 1 3.6579 -3.1512 0.8880 27 1 5.9150 -2.1234 0.8891 28 1 5.9149 -2.1217 -0.8909 29 1 5.4096 -4.7549 -0.0021 30 1 9.9880 -5.2669 0.0058 31 1 7.5162 -9.9286 0.5309 32 1 5.9510 -9.0811 0.5231 33 1 6.2284 -10.4565 -1.4102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:50 Heat of formation + Delta-G solvation = -83.150822 kcal Electronic energy + Delta-G solvation = -17310.488029 eV Core-core repulsion = 14268.527951 eV Total energy + Delta-G solvation = -3041.960077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62361 -39.90198 -37.67481 -37.07427 -35.19313 -33.36069 -32.34251 -29.32160 -28.54099 -26.30940 -24.19607 -22.45452 -22.16056 -20.87766 -19.75126 -18.96906 -18.52869 -17.66095 -17.02952 -16.92061 -16.39482 -16.07631 -15.91516 -15.48067 -15.04511 -14.84288 -14.78758 -14.26130 -13.83617 -13.66139 -13.11960 -12.95457 -12.77478 -12.72626 -12.01044 -11.81361 -11.63222 -11.36772 -11.27767 -11.17474 -10.88574 -10.77109 -10.76443 -10.31390 -9.94857 -8.30160 -6.34537 -0.62350 0.17077 0.49606 0.75588 1.36896 1.38197 1.50515 2.12121 2.18294 2.36052 2.77746 3.05338 3.52059 3.92215 3.98160 4.08114 4.14531 4.17852 4.28939 4.45861 4.54252 4.72475 4.83794 4.85297 4.99898 5.27721 5.43956 5.52440 5.63328 6.19540 6.26409 6.51988 6.73148 6.87702 7.01548 7.30161 8.86453 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.003230 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.135275 B = 8665.501889 C = 9460.020040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.125 3.875 12 N -0.703 5.703 13 C 0.586 3.414 14 O -0.573 6.573 15 C -0.019 4.019 16 C -0.234 4.234 17 S 0.330 5.670 18 C -0.007 4.007 19 C 0.154 3.846 20 O -0.587 6.587 21 N -0.454 5.454 22 H 0.267 0.733 23 H 0.024 0.976 24 H 0.022 0.978 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.415 0.585 30 H 0.199 0.801 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.576 -22.786 1.154 31.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.054 0.946 9 C -0.048 4.048 10 C -0.139 4.139 11 C 0.002 3.998 12 N -0.352 5.352 13 C 0.371 3.629 14 O -0.453 6.453 15 C -0.154 4.154 16 C -0.377 4.377 17 S 0.587 5.413 18 C -0.286 4.286 19 C 0.073 3.927 20 O -0.397 6.397 21 N -0.172 5.172 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.252 0.748 30 H 0.216 0.784 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 22.484 -22.163 1.027 31.588 hybrid contribution -1.356 1.212 0.045 1.819 sum 21.129 -20.951 1.072 29.774 Atomic orbital electron populations 1.70060 1.08261 1.28203 1.52615 1.26004 0.95627 1.03516 0.94099 0.85665 0.79530 0.78280 0.79239 1.19188 1.20902 1.17011 1.21455 0.91886 0.93279 1.50464 0.94646 1.19455 0.94109 0.94229 0.97017 1.21489 0.91888 0.98474 1.02028 1.21442 0.94600 0.81802 1.01978 1.45895 1.06690 1.09926 1.72729 1.17455 0.82587 0.86836 0.76066 1.90775 1.56329 1.45483 1.52757 1.20199 0.90443 0.93244 1.11538 1.27022 1.01090 1.04322 1.05240 1.82380 1.03934 0.94525 1.60417 1.27390 0.97577 0.97944 1.05665 1.20608 0.99798 0.87243 0.85007 1.86463 1.82400 1.45215 1.25639 1.66857 1.38200 0.97967 1.14186 0.92447 0.95777 0.95988 0.92039 0.91888 0.91628 0.91721 0.74823 0.78386 0.87265 0.89884 0.73671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 7 C -0.53 -31.10 9.66 25.60 0.25 -30.86 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.13 4.36 5.67 86.38 0.49 4.85 16 12 N -0.70 -22.50 5.55 -466.50 -2.59 -25.09 16 13 C 0.59 19.32 7.80 86.62 0.68 19.99 16 14 O -0.57 -21.88 16.71 -4.14 -0.07 -21.95 16 15 C -0.02 -0.50 6.70 40.56 0.27 -0.23 16 16 C -0.23 -4.73 10.62 67.12 0.71 -4.02 16 17 S 0.33 4.10 22.92 -56.49 -1.29 2.80 16 18 C -0.01 -0.12 6.97 88.57 0.62 0.50 16 19 C 0.15 1.59 7.62 71.23 0.54 2.14 16 20 O -0.59 -7.19 13.64 -148.98 -2.03 -9.22 16 21 N -0.45 -11.29 10.12 -180.84 -1.83 -13.12 16 22 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 24 H 0.02 1.01 7.57 -2.38 -0.02 0.99 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.42 12.25 7.99 -92.71 -0.74 11.50 16 30 H 0.20 3.57 8.03 -2.91 -0.02 3.54 16 31 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.41 0.65 9.12 -74.06 -0.68 -0.02 16 Total: -1.00 -78.53 306.00 -1.65 -80.18 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.32 Total: 10.56 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.30 Total: -11.05 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -4.12 Total: -98.27 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -2.10 Total: -31.17 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.29 Total: 2.80 kcal Total: -78.53 -1.65 -80.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.974 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds