Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00202 * 2 1 4 4 C 1.53001 * 109.46897 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46888 * 179.97438 * 4 3 2 6 6 C 1.38281 * 119.94256 * 90.00245 * 5 4 3 7 7 C 1.38149 * 120.07817 * 180.23535 * 6 5 4 8 8 C 1.38708 * 119.95752 * 359.48582 * 7 6 5 9 9 O 1.35922 * 120.06401 * 180.25491 * 8 7 6 10 10 C 1.42898 * 116.99623 * 0.25550 * 9 8 7 11 11 C 1.50709 * 109.47218 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99579 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99932 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00419 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99750 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47201 * 59.99757 * 15 13 11 17 17 H 1.48501 * 109.47031 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47355 * 300.00179 * 15 13 11 19 19 C 1.38822 * 119.87756 * 0.51083 * 8 7 6 20 20 Cl 1.73602 * 120.03534 * 179.72208 * 19 8 7 21 21 C 1.38248 * 119.92380 * 359.74669 * 19 8 7 22 22 H 1.09003 * 109.47290 * 300.00659 * 1 2 3 23 23 H 1.09003 * 109.47212 * 59.99760 * 1 2 3 24 24 H 1.08993 * 109.47740 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47114 * 60.00066 * 3 2 1 26 26 H 1.08999 * 109.47167 * 299.99814 * 3 2 1 27 27 H 1.08996 * 109.47303 * 60.00474 * 4 3 2 28 28 H 1.09000 * 109.47365 * 299.99448 * 4 3 2 29 29 H 1.08002 * 119.95700 * 359.94980 * 6 5 4 30 30 H 1.07997 * 120.02220 * 179.72850 * 7 6 5 31 31 H 1.08997 * 109.47513 * 299.99894 * 10 9 8 32 32 H 1.09009 * 109.47472 * 60.00199 * 10 9 8 33 33 H 0.96997 * 120.00129 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.97713 * 180.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0000 6 6 4.4288 3.1925 1.1980 7 6 4.9863 4.4565 1.2006 8 6 5.2749 5.0888 0.0003 9 8 5.8282 6.3303 0.0004 10 6 6.0912 6.9230 1.2738 11 6 6.7002 8.2875 1.0766 12 1 6.8689 8.6643 0.0787 13 6 7.0408 9.0549 2.1702 14 7 6.8348 8.5962 3.3853 15 14 7.7948 10.7464 1.9257 16 1 6.8506 11.6041 1.1655 17 1 8.0683 11.3623 3.2490 18 1 9.0656 10.6171 1.1683 19 6 4.9928 4.4534 -1.2013 20 17 5.3457 5.2439 -2.7061 21 6 4.4300 3.1907 -1.1983 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8574 0.6435 -0.8891 28 1 3.8567 0.6438 0.8909 29 1 4.2074 2.6986 2.1326 30 1 5.2008 4.9504 2.1368 31 1 5.1587 7.0179 1.8301 32 1 6.7846 6.2934 1.8315 33 1 7.0741 9.1363 4.1547 34 1 4.2105 2.6954 -2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601962931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = -100.076159 kcal Electronic energy + Delta-G solvation = -17609.526421 eV Core-core repulsion = 14532.495949 eV Total energy + Delta-G solvation = -3077.030473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13471 -39.16584 -38.34813 -37.36691 -35.12371 -33.71864 -31.88177 -30.25132 -28.97203 -26.99540 -25.49000 -24.17407 -23.38596 -21.86027 -19.29203 -18.54807 -17.54320 -17.33535 -16.80997 -16.61364 -16.49354 -16.28161 -15.89829 -15.31041 -14.86014 -14.71030 -14.25534 -14.02788 -13.63379 -13.14286 -13.06232 -12.91699 -12.75946 -12.49248 -12.38904 -12.20009 -12.11625 -11.99311 -11.73869 -11.71566 -11.39873 -10.71650 -10.58471 -9.89073 -9.01745 -8.40529 -6.54126 0.14359 0.29332 1.22082 1.38570 1.42635 1.51037 2.24409 2.51375 2.63066 2.92951 2.94568 3.78052 3.90071 4.07790 4.13007 4.23417 4.29687 4.45969 4.56840 4.57412 4.60256 4.66676 4.76696 4.88635 4.95403 4.96122 5.04209 5.14917 5.26008 5.48275 5.51385 5.74392 5.81379 6.24071 6.44788 6.71611 7.17292 8.71293 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.003889 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.540683 B = 7197.828405 C = 7995.223999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.064 3.936 4 C -0.061 4.061 5 C -0.115 4.115 6 C -0.060 4.060 7 C -0.212 4.212 8 C 0.119 3.881 9 O -0.325 6.325 10 C 0.212 3.788 11 C -0.558 4.558 12 H 0.064 0.936 13 C 0.015 3.985 14 N -0.923 5.923 15 Si 0.984 3.016 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.266 1.266 19 C -0.091 4.091 20 Cl -0.069 7.069 21 C -0.061 4.061 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.274 0.726 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 -15.509 -6.236 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.012 4.012 4 C -0.098 4.098 5 C -0.115 4.115 6 C -0.078 4.078 7 C -0.231 4.231 8 C 0.071 3.929 9 O -0.238 6.238 10 C 0.139 3.861 11 C -0.595 4.595 12 H 0.082 0.918 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.806 3.194 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.191 1.191 19 C -0.118 4.118 20 Cl -0.040 7.040 21 C -0.079 4.079 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.142 0.858 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.083 0.917 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.693 -15.425 -6.331 19.287 hybrid contribution 0.291 1.395 0.332 1.463 sum -9.402 -14.030 -5.999 17.923 Atomic orbital electron populations 1.22916 0.79652 1.03823 1.00709 1.87803 1.21285 1.28500 1.95609 1.22561 0.93380 0.84318 1.00958 1.20292 0.92711 0.91549 1.05232 1.19625 1.02818 0.97477 0.91607 1.21205 0.94723 0.92379 0.99476 1.21413 1.06737 0.98482 0.96502 1.19387 0.93580 0.86070 0.93869 1.86138 1.74996 1.27167 1.35505 1.20223 0.94646 0.92578 0.78654 1.21259 1.43195 1.00825 0.94211 0.91778 1.25887 0.95403 1.03186 0.94029 1.70026 1.47548 1.39867 0.98708 0.85223 0.78987 0.77247 0.77946 1.19022 1.19669 1.19055 1.20385 1.10307 0.96264 0.84830 1.98328 1.94033 1.80952 1.30710 1.21006 0.96000 0.90742 1.00161 0.93512 0.93386 0.88290 0.92950 0.92747 0.89032 0.89129 0.82684 0.85821 0.97682 0.97731 0.91679 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.86 10.70 -148.98 -1.59 -9.45 16 3 C 0.06 1.15 5.92 71.98 0.43 1.57 16 4 C -0.06 -1.08 5.71 29.85 0.17 -0.91 16 5 C -0.11 -2.72 5.13 -19.85 -0.10 -2.82 16 6 C -0.06 -1.63 9.69 22.26 0.22 -1.41 16 7 C -0.21 -7.79 9.04 22.36 0.20 -7.59 16 8 C 0.12 4.91 6.68 22.52 0.15 5.06 16 9 O -0.32 -16.35 9.58 -92.67 -0.89 -17.24 16 10 C 0.21 11.69 4.49 71.24 0.32 12.01 16 11 C -0.56 -32.71 9.43 25.60 0.24 -32.47 16 12 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.01 0.83 5.46 84.65 0.46 1.29 16 14 N -0.92 -53.73 13.29 21.44 0.28 -53.45 16 15 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 C -0.09 -3.15 6.33 22.41 0.14 -3.01 16 20 Cl -0.07 -2.36 28.50 -2.72 -0.08 -2.43 16 21 C -0.06 -1.60 9.48 22.27 0.21 -1.38 16 22 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.12 4.94 6.30 -2.91 -0.02 4.92 16 31 H 0.01 0.31 7.65 -2.39 -0.02 0.29 16 32 H 0.00 0.28 7.67 -2.38 -0.02 0.26 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.22 312.06 4.53 -60.69 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.09 Total: 4.37 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.69 Total: -28.07 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.28 Total: -53.45 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -2.48 Total: -26.69 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -65.22 4.53 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601962931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.385 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds