Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34180 * 126.10776 * 275.00167 * 4 2 1 6 6 O 1.35018 * 107.25495 * 179.97438 * 5 4 2 7 7 C 1.34205 * 107.74073 * 0.02562 * 6 5 4 8 8 N 1.38644 * 125.69887 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99992 * 0.02562 * 8 7 6 10 10 O 1.21274 * 120.00115 * 0.02562 * 9 8 7 11 11 C 1.50710 * 119.99629 * 180.02562 * 9 8 7 12 12 S 1.81001 * 109.46603 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99619 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99937 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00085 * 180.02562 * 13 12 11 16 16 N 1.31636 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00311 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47355 * 59.99660 * 17 15 13 19 19 H 1.48496 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46857 * 299.99731 * 17 15 13 21 21 N 1.30954 * 108.59620 * 359.72731 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.08002 * 126.37706 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99761 * 180.02562 * 8 7 6 31 31 H 1.08991 * 109.46908 * 300.00226 * 11 9 8 32 32 H 1.08995 * 109.46936 * 60.00464 * 11 9 8 33 33 H 0.97004 * 119.99955 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.2068 -0.1638 2.4434 6 8 2.6681 -1.1364 3.2584 7 6 2.7699 -2.2621 2.5349 8 7 3.2074 -3.4903 3.0067 9 6 3.5750 -3.6247 4.2963 10 8 3.5228 -2.6714 5.0443 11 6 4.0511 -4.9596 4.8089 12 16 4.4673 -4.8179 6.5647 13 6 4.9786 -6.4720 6.8923 14 1 4.9652 -7.2079 6.1019 15 6 5.3987 -6.8292 8.1660 16 7 5.4156 -5.9321 9.1292 17 14 5.9415 -8.5825 8.5132 18 1 7.0972 -8.9240 7.6454 19 1 6.3392 -8.7046 9.9387 20 1 4.8190 -9.5131 8.2315 21 7 2.3810 -2.0083 1.3105 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 2.0135 0.8629 2.7171 30 1 3.2488 -4.2528 2.4085 31 1 3.2616 -5.7001 4.6816 32 1 4.9338 -5.2696 4.2498 33 1 5.7095 -6.1816 10.0193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602396587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = -17.285218 kcal Electronic energy + Delta-G solvation = -17527.843895 eV Core-core repulsion = 14488.739964 eV Total energy + Delta-G solvation = -3039.103931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.32051 -39.59692 -36.51461 -35.18452 -33.49133 -32.50848 -30.08916 -28.26669 -27.35951 -25.58231 -23.81688 -22.60608 -21.51472 -19.47433 -18.29107 -17.72955 -16.88269 -16.60479 -16.43747 -15.15620 -15.05188 -14.87131 -14.45364 -14.21882 -13.76092 -13.58691 -13.19318 -12.69793 -12.51335 -12.46493 -11.79916 -11.60867 -11.37322 -11.18393 -11.13934 -11.08587 -10.85351 -10.54401 -10.42725 -9.96756 -9.92936 -9.13329 -8.39355 -8.25032 -6.62676 -6.29517 -4.02493 1.44155 1.97358 2.35735 2.96469 3.01314 3.19689 3.22743 3.25597 3.43023 4.11243 4.27071 4.58384 4.79988 4.86623 5.06102 5.06511 5.08576 5.24260 5.34450 5.46816 5.50879 5.53954 5.65775 5.71017 5.86214 5.90283 5.94109 5.98233 6.12323 6.40022 6.85323 7.52001 7.85180 8.06334 8.27079 9.15751 10.77849 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.071143 B = 0.003116 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.477925 B = 8983.964710 C = 9216.049618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.147 4.147 4 C 0.011 3.989 5 C -0.092 4.092 6 O -0.180 6.180 7 C 0.435 3.565 8 N -0.619 5.619 9 C 0.529 3.471 10 O -0.470 6.470 11 C -0.150 4.150 12 S -0.053 6.053 13 C -0.539 4.539 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.921 3.079 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.273 1.273 21 N -0.512 5.512 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.214 0.786 30 H 0.436 0.564 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 9.704 -17.745 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.205 4.205 4 C -0.109 4.109 5 C -0.163 4.163 6 O -0.065 6.065 7 C 0.138 3.862 8 N -0.281 5.281 9 C 0.315 3.685 10 O -0.338 6.338 11 C -0.300 4.300 12 S 0.173 5.827 13 C -0.687 4.687 14 H 0.093 0.907 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.747 3.253 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.199 1.199 21 N -0.250 5.250 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.277 0.723 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.281 10.863 -16.611 21.141 hybrid contribution 0.458 -2.097 -0.329 2.172 sum -6.823 8.765 -16.939 20.257 Atomic orbital electron populations 1.21830 0.93810 1.02396 1.01984 1.19437 0.95693 0.94655 0.93386 1.21883 1.01559 0.94745 1.02297 1.21452 1.03547 0.89556 0.96355 1.24569 1.07857 0.94332 0.89572 1.84714 1.65223 1.17181 1.39345 1.21560 0.96822 0.83442 0.84360 1.42917 1.65375 1.06702 1.13056 1.20916 0.76157 0.91807 0.79573 1.90820 1.48458 1.40158 1.54337 1.23535 1.04588 0.94405 1.07486 1.85499 1.84934 1.16156 0.96071 1.22806 1.51614 0.95371 0.98883 0.90667 1.25007 0.94869 0.98649 0.94993 1.70001 1.44071 1.33874 1.02238 0.86182 0.79106 0.82458 0.77525 1.19848 1.20771 1.19855 1.70611 1.22268 1.16343 1.15795 0.91964 0.92465 0.92270 0.89434 0.91694 0.92331 0.92186 0.76984 0.72276 0.88054 0.88048 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 2 C -0.01 -0.11 3.37 -91.77 -0.31 -0.42 16 3 C -0.15 -0.98 8.77 37.15 0.33 -0.66 16 4 C 0.01 0.14 6.03 -82.80 -0.50 -0.36 16 5 C -0.09 -1.16 11.32 29.30 0.33 -0.82 16 6 O -0.18 -3.04 9.09 -17.89 -0.16 -3.21 16 7 C 0.43 6.92 8.88 -86.61 -0.77 6.15 16 8 N -0.62 -9.01 5.39 -13.05 -0.07 -9.08 16 9 C 0.53 9.66 7.81 -10.98 -0.09 9.57 16 10 O -0.47 -10.53 14.62 -16.29 -0.24 -10.77 16 11 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 12 S -0.05 -1.38 20.57 -107.50 -2.21 -3.59 16 13 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 14 H 0.08 1.93 7.80 -52.49 -0.41 1.52 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 17 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 N -0.51 -7.50 11.33 -10.57 -0.12 -7.62 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.34 7.28 -51.93 -0.38 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.21 1.83 7.37 -52.49 -0.39 1.44 16 30 H 0.44 4.68 8.82 -40.82 -0.36 4.32 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -34.25 306.33 -6.77 -41.02 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.05 Total: 0.02 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.25 Total: -2.41 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.54 Total: -41.55 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.40 Total: -13.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.21 Total: -3.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.25 -6.77 -41.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602396587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.739 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds