Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34180 * 126.10776 * 275.00167 * 4 2 1 6 6 O 1.35018 * 107.25495 * 179.97438 * 5 4 2 7 7 C 1.34205 * 107.74073 * 0.02562 * 6 5 4 8 8 N 1.38644 * 125.69887 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99992 * 0.02562 * 8 7 6 10 10 O 1.21274 * 120.00115 * 0.02562 * 9 8 7 11 11 C 1.50710 * 119.99629 * 180.02562 * 9 8 7 12 12 S 1.81001 * 109.46603 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99619 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99937 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00085 * 180.02562 * 13 12 11 16 16 N 1.31636 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00311 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47355 * 59.99660 * 17 15 13 19 19 H 1.48496 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46857 * 299.99731 * 17 15 13 21 21 N 1.30954 * 108.59620 * 359.72731 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.08002 * 126.37706 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99761 * 180.02562 * 8 7 6 31 31 H 1.08991 * 109.46908 * 300.00226 * 11 9 8 32 32 H 1.08995 * 109.46936 * 60.00464 * 11 9 8 33 33 H 0.97004 * 119.99955 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.2068 -0.1638 2.4434 6 8 2.6681 -1.1364 3.2584 7 6 2.7699 -2.2621 2.5349 8 7 3.2074 -3.4903 3.0067 9 6 3.5750 -3.6247 4.2963 10 8 3.5228 -2.6714 5.0443 11 6 4.0511 -4.9596 4.8089 12 16 4.4673 -4.8179 6.5647 13 6 4.9786 -6.4720 6.8923 14 1 4.9652 -7.2079 6.1019 15 6 5.3987 -6.8292 8.1660 16 7 5.4156 -5.9321 9.1292 17 14 5.9415 -8.5825 8.5132 18 1 7.0972 -8.9240 7.6454 19 1 6.3392 -8.7046 9.9387 20 1 4.8190 -9.5131 8.2315 21 7 2.3810 -2.0083 1.3105 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 2.0135 0.8629 2.7171 30 1 3.2488 -4.2528 2.4085 31 1 3.2616 -5.7001 4.6816 32 1 4.9338 -5.2696 4.2498 33 1 5.7095 -6.1816 10.0193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602396587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = -42.079536 kcal Electronic energy + Delta-G solvation = -17528.919057 eV Core-core repulsion = 14488.739964 eV Total energy + Delta-G solvation = -3040.179093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.44084 -41.03186 -37.35803 -36.50966 -34.59705 -34.52649 -31.50773 -29.36809 -27.95388 -27.67131 -24.77670 -23.79694 -22.66463 -20.60180 -19.95450 -19.11544 -18.08233 -18.03950 -17.53806 -16.88048 -16.55111 -16.12500 -15.94235 -15.21390 -15.05421 -14.57120 -14.49097 -13.97559 -13.91393 -13.19130 -13.00288 -12.87072 -12.77134 -12.66575 -12.40738 -12.20056 -11.99401 -11.79510 -11.56488 -11.47724 -11.45372 -11.13055 -10.33776 -9.34167 -8.70510 -8.35695 -6.14851 0.26807 0.74478 1.16578 1.33164 1.45324 1.49904 1.58761 1.77101 2.09329 2.25273 2.99389 3.12792 3.38761 3.75470 3.80423 4.15298 4.20873 4.24736 4.31441 4.43244 4.44557 4.72698 4.83566 4.91383 5.02594 5.08796 5.14065 5.25686 5.40687 5.42464 5.44045 5.74036 6.19417 6.64244 6.79475 7.06152 8.73215 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.071143 B = 0.003116 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.477925 B = 8983.964710 C = 9216.049618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.003 3.997 5 C -0.091 4.091 6 O -0.211 6.211 7 C 0.406 3.594 8 N -0.598 5.598 9 C 0.538 3.462 10 O -0.519 6.519 11 C -0.124 4.124 12 S -0.145 6.145 13 C -0.546 4.546 14 H 0.089 0.911 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.261 1.261 21 N -0.510 5.510 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.248 0.752 30 H 0.453 0.547 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 9.267 -19.891 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.161 4.161 6 O -0.096 6.096 7 C 0.110 3.890 8 N -0.260 5.260 9 C 0.325 3.675 10 O -0.390 6.390 11 C -0.274 4.274 12 S 0.082 5.918 13 C -0.694 4.694 14 H 0.107 0.893 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.186 1.186 21 N -0.249 5.249 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.298 0.702 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.744 10.412 -18.820 22.860 hybrid contribution 0.516 -1.836 0.158 1.914 sum -7.228 8.576 -18.662 21.773 Atomic orbital electron populations 1.21819 0.92806 1.01784 1.03287 1.19601 0.96408 0.95546 0.91472 1.21883 1.01142 0.93322 1.03818 1.22113 1.03029 0.88800 0.97716 1.25363 1.06480 0.94972 0.89285 1.84706 1.65735 1.18205 1.40912 1.21768 0.98753 0.83648 0.84841 1.42448 1.64301 1.07269 1.12022 1.20694 0.75646 0.90907 0.80274 1.90807 1.50797 1.41464 1.55955 1.23336 1.06611 0.95461 1.02032 1.85692 1.85595 1.17267 1.03206 1.23183 1.51137 0.95504 0.99531 0.89272 1.26130 0.94788 1.03453 0.94757 1.70173 1.45493 1.36412 1.02749 0.84992 0.79103 0.76480 0.77369 1.18583 1.20663 1.18594 1.70625 1.21582 1.17679 1.15062 0.89716 0.92139 0.93830 0.89662 0.89737 0.91319 0.92854 0.73607 0.70175 0.85346 0.85332 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 2 C -0.01 -0.17 3.37 -11.54 -0.04 -0.21 16 3 C -0.14 -1.53 8.77 71.98 0.63 -0.90 16 4 C 0.00 0.08 6.03 41.21 0.25 0.33 16 5 C -0.09 -2.18 11.32 66.89 0.76 -1.43 16 6 O -0.21 -7.10 9.09 12.19 0.11 -6.99 16 7 C 0.41 12.73 8.88 178.95 1.59 14.32 16 8 N -0.60 -16.90 5.39 -423.79 -2.28 -19.19 16 9 C 0.54 19.51 7.81 87.66 0.68 20.20 16 10 O -0.52 -23.84 14.62 17.89 0.26 -23.58 16 11 C -0.12 -4.50 6.16 71.24 0.44 -4.06 16 12 S -0.14 -7.69 20.57 -56.49 -1.16 -8.85 16 13 C -0.55 -29.91 9.50 67.95 0.65 -29.26 16 14 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 15 C 0.01 0.75 5.49 84.86 0.47 1.22 16 16 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 17 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 N -0.51 -14.46 11.33 -301.67 -3.42 -17.88 16 22 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.04 0.70 8.14 -2.38 -0.02 0.69 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.59 7.28 -2.39 -0.02 0.58 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.25 3.71 7.37 -2.91 -0.02 3.68 16 30 H 0.45 8.95 8.82 -92.71 -0.82 8.14 16 31 H 0.13 4.01 8.14 -2.40 -0.02 3.99 16 32 H 0.13 4.01 8.14 -2.40 -0.02 4.00 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.54 306.33 2.22 -74.32 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.32 Total: 13.33 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.08 Total: -0.96 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -5.42 Total: -91.74 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: 0.37 Total: -30.56 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.85 kcal Total: -76.54 2.22 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602396587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.245 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds