Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34798 * 116.99593 * 2 1 4 4 O 1.21556 * 120.00565 * 0.02562 * 3 2 1 5 5 C 1.47112 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.35291 * 123.15920 * 179.97438 * 5 3 2 7 7 S 1.70941 * 108.82016 * 179.97438 * 6 5 3 8 8 C 1.70768 * 91.14005 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.71217 * 179.73288 * 8 7 6 10 10 N 1.46895 * 109.47436 * 270.02984 * 9 8 7 11 11 C 1.46895 * 111.00459 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47071 * 324.99489 * 11 10 9 13 13 C 1.53003 * 109.47547 * 84.99165 * 11 10 9 14 14 C 1.50698 * 109.47484 * 204.99979 * 11 10 9 15 15 H 1.08001 * 119.99720 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00365 * 179.97438 * 14 11 10 17 17 N 1.31507 * 119.99898 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00134 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47159 * 89.99336 * 18 16 14 20 20 H 1.48499 * 109.47103 * 209.99536 * 18 16 14 21 21 H 1.48498 * 109.47181 * 329.99976 * 18 16 14 22 22 N 1.28629 * 110.57891 * 359.97438 * 8 7 6 23 23 H 1.09004 * 109.47242 * 299.99569 * 1 2 3 24 24 H 1.08998 * 109.47529 * 60.00220 * 1 2 3 25 25 H 1.09008 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.07991 * 125.59035 * 359.97438 * 6 5 3 27 27 H 1.09008 * 109.46595 * 30.02766 * 9 8 7 28 28 H 1.08997 * 109.47610 * 150.02268 * 9 8 7 29 29 H 1.00907 * 110.99385 * 303.94785 * 10 9 8 30 30 H 1.09002 * 109.46643 * 60.00527 * 13 11 10 31 31 H 1.08998 * 109.47034 * 179.97438 * 13 11 10 32 32 H 1.09000 * 109.47182 * 300.00353 * 13 11 10 33 33 H 0.97003 * 120.00542 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5330 1.2783 -0.0006 6 6 4.2126 2.4481 -0.0011 7 16 5.8886 2.1122 -0.0009 8 6 5.5865 0.4315 -0.0009 9 6 6.6538 -0.6324 -0.0066 10 7 6.9950 -0.9765 -1.3933 11 6 8.0344 -2.0134 -1.4380 12 1 8.7272 -1.8695 -0.6088 13 6 7.3834 -3.3934 -1.3249 14 6 8.7845 -1.9171 -2.7415 15 1 8.5155 -1.1613 -3.4646 16 6 9.8140 -2.7937 -3.0110 17 7 10.1418 -3.7137 -2.1303 18 14 10.7432 -2.6747 -4.6271 19 1 11.8988 -1.7558 -4.4671 20 1 11.2320 -4.0215 -5.0174 21 1 9.8375 -2.1520 -5.6815 22 7 4.3212 0.1996 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.7689 3.4327 -0.0016 27 1 7.5416 -0.2590 0.5041 28 1 6.2851 -1.5198 0.5079 29 1 6.1752 -1.2643 -1.9065 30 1 6.6908 -3.5374 -2.1541 31 1 8.1547 -4.1629 -1.3585 32 1 6.8410 -3.4631 -0.3820 33 1 10.8663 -4.3302 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -38.422891 kcal Electronic energy + Delta-G solvation = -17748.059412 eV Core-core repulsion = 14708.038883 eV Total energy + Delta-G solvation = -3040.020529 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78363 -39.30128 -36.60140 -36.11852 -32.92669 -31.07286 -28.71150 -28.28906 -26.01714 -25.18319 -24.53799 -21.45604 -20.32293 -19.83841 -19.02414 -17.11512 -16.56311 -16.54972 -16.32303 -15.11172 -14.86482 -14.67037 -14.27669 -13.81014 -13.59487 -13.09528 -12.83902 -12.48796 -12.25098 -11.93768 -11.73850 -11.61335 -10.96213 -10.94048 -10.86638 -10.83054 -10.58845 -10.17467 -10.04051 -9.75551 -9.64777 -9.10132 -8.96090 -8.39413 -7.41951 -6.02013 -4.05594 0.39151 1.20302 1.58865 1.70059 2.67697 3.06605 3.31677 3.38126 3.42386 3.97467 4.41999 4.77253 4.93365 5.00954 5.03064 5.09853 5.30009 5.33388 5.38629 5.59754 5.92737 6.02292 6.13435 6.65548 6.82402 7.02883 7.22978 7.32097 7.69471 7.72393 7.81634 8.17907 8.39246 8.50616 9.00993 9.59832 11.05028 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003928 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.671301 B = 7126.186518 C = 7569.633248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.550 3.450 4 O -0.507 6.507 5 C 0.020 3.980 6 C -0.239 4.239 7 S 0.258 5.742 8 C 0.049 3.951 9 C 0.129 3.871 10 N -0.677 5.677 11 C 0.212 3.788 12 H 0.037 0.963 13 C -0.170 4.170 14 C -0.497 4.497 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 N -0.432 5.432 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.188 0.812 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.333 0.667 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 9.505 6.392 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.393 3.607 4 O -0.396 6.396 5 C -0.115 4.115 6 C -0.381 4.381 7 S 0.517 5.483 8 C -0.231 4.231 9 C -0.003 4.003 10 N -0.309 5.309 11 C 0.105 3.895 12 H 0.055 0.945 13 C -0.230 4.230 14 C -0.535 4.535 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 N -0.147 5.147 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.206 0.794 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.026 0.974 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.592 10.196 6.351 16.694 hybrid contribution -1.295 -0.840 -0.618 1.663 sum -12.887 9.356 5.733 16.926 Atomic orbital electron populations 1.23332 0.76157 1.03964 1.02465 1.86724 1.23127 1.31632 1.83481 1.19923 0.86917 0.81666 0.72231 1.90859 1.65885 1.36121 1.46758 1.19180 0.92232 0.88433 1.11685 1.26689 1.00034 1.03915 1.07502 1.83067 1.00423 1.03153 1.61668 1.27473 0.94653 0.98917 1.02079 1.20572 0.92189 0.92745 0.94826 1.60988 1.14045 1.47939 1.07896 1.19226 0.87943 0.84222 0.98090 0.94498 1.22439 1.00495 1.03785 0.96248 1.21109 1.15074 1.15249 1.02105 0.91842 1.24934 0.97161 0.95269 0.97054 1.69875 1.29781 1.19060 1.34891 0.86490 0.79991 0.77117 0.83736 1.20730 1.21402 1.19928 1.67041 1.02607 1.30745 1.14297 0.91860 0.91793 0.87798 0.79450 0.89099 0.92439 0.84955 0.95162 0.89118 0.97353 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 101.05 1.07 1.40 16 2 O -0.33 -4.69 10.50 -40.76 -0.43 -5.12 16 3 C 0.55 8.22 7.94 34.33 0.27 8.49 16 4 O -0.51 -7.88 16.51 -19.31 -0.32 -8.20 16 5 C 0.02 0.29 6.71 -84.55 -0.57 -0.27 16 6 C -0.24 -2.96 10.62 29.68 0.32 -2.64 16 7 S 0.26 3.09 22.92 -107.50 -2.46 0.63 16 8 C 0.05 0.76 6.85 -13.62 -0.09 0.66 16 9 C 0.13 2.17 6.05 -4.98 -0.03 2.14 16 10 N -0.68 -13.71 6.22 -109.22 -0.68 -14.39 16 11 C 0.21 5.09 2.57 -68.87 -0.18 4.91 16 12 H 0.04 0.95 7.80 -51.92 -0.41 0.54 16 13 C -0.17 -3.99 8.94 37.16 0.33 -3.66 16 14 C -0.50 -13.29 8.84 -34.44 -0.30 -13.60 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -24.96 11.32 55.43 0.63 -24.33 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 N -0.43 -7.08 10.60 -8.53 -0.09 -7.18 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.19 1.89 8.03 -52.49 -0.42 1.47 16 27 H 0.09 1.42 8.06 -51.92 -0.42 1.00 16 28 H 0.06 0.99 7.43 -51.93 -0.39 0.60 16 29 H 0.33 6.79 8.46 -39.29 -0.33 6.46 16 30 H 0.03 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 32 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -29.96 305.29 -6.95 -36.92 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.90 Total: 2.17 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 0.72 Total: -1.13 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.14 Total: -45.90 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.75 Total: -13.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.46 Total: 0.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.96 -6.95 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.507 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds