Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34798 * 116.99593 * 2 1 4 4 O 1.21556 * 120.00565 * 0.02562 * 3 2 1 5 5 C 1.47112 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.35291 * 123.15920 * 179.97438 * 5 3 2 7 7 S 1.70941 * 108.82016 * 179.97438 * 6 5 3 8 8 C 1.70768 * 91.14005 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.71217 * 179.73288 * 8 7 6 10 10 N 1.46895 * 109.47436 * 270.02984 * 9 8 7 11 11 C 1.46895 * 111.00459 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47071 * 324.99489 * 11 10 9 13 13 C 1.53003 * 109.47547 * 84.99165 * 11 10 9 14 14 C 1.50698 * 109.47484 * 204.99979 * 11 10 9 15 15 H 1.08001 * 119.99720 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00365 * 179.97438 * 14 11 10 17 17 N 1.31507 * 119.99898 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00134 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47159 * 89.99336 * 18 16 14 20 20 H 1.48499 * 109.47103 * 209.99536 * 18 16 14 21 21 H 1.48498 * 109.47181 * 329.99976 * 18 16 14 22 22 N 1.28629 * 110.57891 * 359.97438 * 8 7 6 23 23 H 1.09004 * 109.47242 * 299.99569 * 1 2 3 24 24 H 1.08998 * 109.47529 * 60.00220 * 1 2 3 25 25 H 1.09008 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.07991 * 125.59035 * 359.97438 * 6 5 3 27 27 H 1.09008 * 109.46595 * 30.02766 * 9 8 7 28 28 H 1.08997 * 109.47610 * 150.02268 * 9 8 7 29 29 H 1.00907 * 110.99385 * 303.94785 * 10 9 8 30 30 H 1.09002 * 109.46643 * 60.00527 * 13 11 10 31 31 H 1.08998 * 109.47034 * 179.97438 * 13 11 10 32 32 H 1.09000 * 109.47182 * 300.00353 * 13 11 10 33 33 H 0.97003 * 120.00542 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5330 1.2783 -0.0006 6 6 4.2126 2.4481 -0.0011 7 16 5.8886 2.1122 -0.0009 8 6 5.5865 0.4315 -0.0009 9 6 6.6538 -0.6324 -0.0066 10 7 6.9950 -0.9765 -1.3933 11 6 8.0344 -2.0134 -1.4380 12 1 8.7272 -1.8695 -0.6088 13 6 7.3834 -3.3934 -1.3249 14 6 8.7845 -1.9171 -2.7415 15 1 8.5155 -1.1613 -3.4646 16 6 9.8140 -2.7937 -3.0110 17 7 10.1418 -3.7137 -2.1303 18 14 10.7432 -2.6747 -4.6271 19 1 11.8988 -1.7558 -4.4671 20 1 11.2320 -4.0215 -5.0174 21 1 9.8375 -2.1520 -5.6815 22 7 4.3212 0.1996 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.7689 3.4327 -0.0016 27 1 7.5416 -0.2590 0.5041 28 1 6.2851 -1.5198 0.5079 29 1 6.1752 -1.2643 -1.9065 30 1 6.6908 -3.5374 -2.1541 31 1 8.1547 -4.1629 -1.3585 32 1 6.8410 -3.4631 -0.3820 33 1 10.8663 -4.3302 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -58.993540 kcal Electronic energy + Delta-G solvation = -17748.951422 eV Core-core repulsion = 14708.038883 eV Total energy + Delta-G solvation = -3040.912539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85304 -40.40480 -37.89117 -37.56706 -34.73339 -32.52233 -30.25377 -29.15312 -27.38079 -27.10867 -25.76266 -22.66687 -22.13751 -20.95321 -20.11935 -18.47108 -18.01402 -17.58912 -17.52828 -16.80990 -16.33497 -15.99131 -15.61597 -15.02528 -14.87638 -14.46189 -14.17902 -13.90370 -13.54145 -13.28747 -13.05040 -12.94593 -12.82256 -12.68055 -12.40942 -12.12936 -11.96559 -11.88635 -11.87560 -11.09078 -10.84694 -10.73304 -10.44777 -10.04851 -9.07855 -8.06605 -6.17034 -0.65291 0.18770 0.51104 0.57511 1.46835 1.48086 1.58106 1.72821 1.95805 2.47565 2.86847 3.22748 3.61798 3.82948 4.02754 4.14707 4.23877 4.29837 4.35260 4.60131 4.65059 4.73412 4.82900 4.93369 5.11131 5.12431 5.39167 5.72193 5.81902 6.23271 6.26800 6.57723 6.64880 6.70004 6.95162 7.52398 8.98979 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003928 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.671301 B = 7126.186518 C = 7569.633248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.550 3.450 4 O -0.521 6.521 5 C -0.011 4.011 6 C -0.224 4.224 7 S 0.335 5.665 8 C 0.015 3.985 9 C 0.134 3.866 10 N -0.677 5.677 11 C 0.217 3.783 12 H 0.017 0.983 13 C -0.158 4.158 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.271 1.271 22 N -0.452 5.452 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.130 0.870 26 H 0.213 0.787 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.332 0.668 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 10.901 6.198 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.393 3.607 4 O -0.412 6.412 5 C -0.145 4.145 6 C -0.367 4.367 7 S 0.593 5.407 8 C -0.264 4.264 9 C 0.002 3.998 10 N -0.307 5.307 11 C 0.109 3.891 12 H 0.035 0.965 13 C -0.218 4.218 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.196 1.196 22 N -0.169 5.169 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.148 0.852 26 H 0.230 0.770 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.912 11.591 6.164 17.727 hybrid contribution -1.256 -1.202 -0.510 1.812 sum -13.168 10.389 5.654 17.700 Atomic orbital electron populations 1.23662 0.73932 1.05939 1.03055 1.86702 1.25475 1.31403 1.83170 1.19987 0.87063 0.81767 0.71910 1.90836 1.66166 1.36398 1.47755 1.19318 0.92417 0.88955 1.13836 1.27098 1.00524 1.04372 1.04689 1.82784 0.99149 0.99360 1.59370 1.27127 0.94128 1.00807 1.04370 1.20477 0.93267 0.93392 0.92651 1.60824 1.13380 1.46256 1.10279 1.18983 0.88529 0.85401 0.96179 0.96469 1.22263 0.99650 1.02730 0.97141 1.21409 1.15682 1.15091 1.03070 0.92574 1.25653 0.98012 0.95007 0.99996 1.69992 1.30171 1.19574 1.36380 0.85551 0.78791 0.77079 0.80133 1.20155 1.21206 1.19602 1.66966 1.03258 1.32267 1.14380 0.91116 0.91369 0.85224 0.76981 0.88046 0.93177 0.85123 0.95340 0.91718 0.95511 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.35 -9.68 10.50 -57.10 -0.60 -10.28 16 3 C 0.55 15.98 7.94 70.15 0.56 16.54 16 4 O -0.52 -15.63 16.51 19.65 0.32 -15.31 16 5 C -0.01 -0.31 6.71 40.52 0.27 -0.04 16 6 C -0.22 -5.00 10.62 67.14 0.71 -4.28 16 7 S 0.33 7.17 22.92 -56.49 -1.29 5.87 16 8 C 0.02 0.44 6.85 88.58 0.61 1.05 16 9 C 0.13 4.44 6.05 85.56 0.52 4.96 16 10 N -0.68 -27.21 6.22 -499.47 -3.11 -30.32 16 11 C 0.22 10.48 2.57 44.17 0.11 10.60 16 12 H 0.02 0.90 7.80 -2.38 -0.02 0.88 16 13 C -0.16 -7.47 8.94 71.98 0.64 -6.83 16 14 C -0.51 -27.56 8.84 25.60 0.23 -27.33 16 15 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 16 C 0.01 0.63 5.30 84.66 0.45 1.08 16 17 N -0.92 -51.64 11.32 21.45 0.24 -51.39 16 18 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 N -0.45 -14.53 10.60 -180.90 -1.92 -16.45 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.21 3.58 8.03 -2.91 -0.02 3.55 16 27 H 0.10 3.08 8.06 -2.38 -0.02 3.06 16 28 H 0.05 1.72 7.43 -2.39 -0.02 1.70 16 29 H 0.33 13.48 8.46 -89.69 -0.76 12.73 16 30 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 32 H 0.03 1.11 7.45 -2.39 -0.02 1.10 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -63.69 305.29 1.35 -62.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.38 Total: 13.12 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.30 Total: -2.59 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.78 Total: -98.16 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.28 Total: -25.58 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 7.17 SS G_CDS: -1.29 Total: 5.87 kcal Total: -63.69 1.35 -62.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.344 kcal (2) G-P(sol) polarization free energy of solvation -63.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds