Wall clock time and date at job start Mon Mar 30 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46493 * 109.47063 * 90.00325 * 6 5 4 8 8 C 1.34774 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00137 * 180.02562 * 8 7 6 11 11 S 1.80996 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.76198 * 100.00148 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99893 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00469 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47120 * 90.00330 * 16 14 12 18 18 H 1.48504 * 109.47427 * 210.00206 * 16 14 12 19 19 H 1.48504 * 109.47315 * 330.00099 * 16 14 12 20 20 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 21 21 N 1.20916 * 111.56681 * 359.97438 * 20 5 4 22 22 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 24 24 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 25 25 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 26 26 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 27 27 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 28 28 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 29 29 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 30 30 H 0.96998 * 120.00406 * 359.97438 * 7 6 5 31 31 H 1.09008 * 109.47197 * 300.00453 * 10 8 7 32 32 H 1.08997 * 109.47214 * 59.99629 * 10 8 7 33 33 H 0.97006 * 120.00639 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2533 4.3230 0.5223 8 6 6.1912 5.2026 0.9263 9 8 5.9265 6.0217 1.7806 10 6 7.5688 5.1684 0.3164 11 16 8.5912 6.4625 1.0620 12 6 10.1002 6.2003 0.1910 13 1 10.1673 5.4166 -0.5490 14 6 11.2022 7.0017 0.4552 15 7 11.1203 7.9572 1.3567 16 14 12.8023 6.7232 -0.4677 17 1 12.8110 7.5472 -1.7031 18 1 13.9460 7.1132 0.3955 19 1 12.9219 5.2878 -0.8293 20 8 2.2910 3.3942 -0.5958 21 7 1.7265 2.3561 -0.8523 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.3965 1.5367 1.7808 28 1 3.4594 5.3301 0.9304 29 1 3.9876 4.1877 2.1892 30 1 5.4652 3.6677 -0.1607 31 1 8.0238 4.1951 0.5008 32 1 7.4949 5.3371 -0.7579 33 1 11.8906 8.5170 1.5417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610155165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:26 Heat of formation + Delta-G solvation = 13.000252 kcal Electronic energy + Delta-G solvation = -17168.276425 eV Core-core repulsion = 14130.485771 eV Total energy + Delta-G solvation = -3037.790654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.22945 -39.26873 -35.84481 -35.27349 -32.45850 -32.41170 -31.44325 -29.53452 -26.42044 -25.44865 -24.73125 -23.28395 -20.58413 -20.13629 -18.13701 -17.87954 -17.45094 -16.35458 -15.94000 -15.41535 -14.99065 -14.81873 -14.73319 -14.00702 -13.96045 -13.82930 -13.23317 -13.08128 -12.71556 -12.55564 -12.04226 -11.94466 -11.83752 -11.23305 -11.07704 -11.04450 -10.78909 -10.34432 -10.02185 -9.84139 -9.40882 -9.12827 -9.06209 -8.27264 -6.52823 -6.23579 -3.94547 1.04039 1.88684 2.68479 2.97530 3.05885 3.21573 3.27546 3.31936 3.69488 3.81842 4.02915 4.18462 4.60390 4.75700 4.80891 4.81714 4.98563 5.07880 5.11791 5.25804 5.38080 5.43373 5.43759 5.60209 5.64313 5.68448 5.82973 5.84287 6.09893 6.35630 7.52182 7.58160 7.95852 8.33374 8.46057 9.21888 10.83803 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045791 B = 0.002904 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.320627 B = 9639.407897 C = 9986.427405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.015 3.985 4 C -0.210 4.210 5 C -0.043 4.043 6 C 0.204 3.796 7 N -0.737 5.737 8 C 0.536 3.464 9 O -0.513 6.513 10 C -0.153 4.153 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 O 0.108 5.892 21 N -0.358 5.358 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.175 0.825 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.402 0.598 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 -15.351 -2.084 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.232 4.232 5 C -0.107 4.107 6 C 0.079 3.921 7 N -0.394 5.394 8 C 0.323 3.677 9 O -0.386 6.386 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 O 0.039 5.961 21 N -0.061 5.061 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.192 0.808 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.740 -13.773 -1.627 23.314 hybrid contribution 1.849 -1.705 -1.224 2.797 sum -16.890 -15.478 -2.850 23.086 Atomic orbital electron populations 1.21736 0.94031 1.02246 1.02651 1.19966 0.96631 0.87940 1.03783 1.23646 0.98838 0.98398 0.93494 1.22564 1.03232 0.93595 1.03776 1.24480 0.98084 0.97609 0.90520 1.19566 0.80609 0.95003 0.96941 1.46043 1.10918 1.38004 1.44449 1.20347 0.85786 0.79652 0.81949 1.90724 1.80569 1.36461 1.30896 1.23533 0.95225 1.07236 1.04366 1.85398 1.06430 1.38498 1.52881 1.22860 0.97349 1.21683 1.26531 0.90882 1.24993 0.98839 0.94466 0.95283 1.70011 1.31064 1.18333 1.30846 0.86162 0.81327 0.78641 0.79331 1.20251 1.20744 1.19698 1.84871 1.44384 1.29540 1.37266 1.73844 1.16717 0.93240 1.22293 0.91726 0.92457 0.92068 0.89835 0.89466 0.80774 0.88985 0.87976 0.76397 0.89030 0.88988 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.88 37.16 0.37 -0.58 16 2 C -0.05 -0.30 6.53 -27.89 -0.18 -0.48 16 3 C 0.01 0.14 6.59 -82.10 -0.54 -0.40 16 4 C -0.21 -1.83 11.05 -39.38 -0.44 -2.26 16 5 C -0.04 -0.42 6.86 -35.30 -0.24 -0.66 16 6 C 0.20 2.15 6.24 -5.19 -0.03 2.11 16 7 N -0.74 -9.17 5.55 -61.47 -0.34 -9.51 16 8 C 0.54 9.40 7.85 -10.99 -0.09 9.31 16 9 O -0.51 -10.96 15.86 5.56 0.09 -10.87 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 11 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 12 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 16 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 O 0.11 1.25 11.20 17.17 0.19 1.44 16 21 N -0.36 -4.21 12.06 33.43 0.40 -3.80 16 22 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 4.11 8.46 -40.82 -0.35 3.76 16 31 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -33.86 311.38 -6.32 -40.17 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.12 Total: -0.89 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.73 Total: -8.49 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.80 Total: -38.46 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.28 Total: -9.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.86 -6.32 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610155165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.174 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds