Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46493 * 109.47063 * 90.00325 * 6 5 4 8 8 C 1.34774 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00137 * 180.02562 * 8 7 6 11 11 S 1.80996 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.76198 * 100.00148 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99893 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00469 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47120 * 90.00330 * 16 14 12 18 18 H 1.48504 * 109.47427 * 210.00206 * 16 14 12 19 19 H 1.48504 * 109.47315 * 330.00099 * 16 14 12 20 20 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 21 21 N 1.20916 * 111.56681 * 359.97438 * 20 5 4 22 22 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 24 24 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 25 25 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 26 26 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 27 27 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 28 28 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 29 29 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 30 30 H 0.96998 * 120.00406 * 359.97438 * 7 6 5 31 31 H 1.09008 * 109.47197 * 300.00453 * 10 8 7 32 32 H 1.08997 * 109.47214 * 59.99629 * 10 8 7 33 33 H 0.97006 * 120.00639 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2533 4.3230 0.5223 8 6 6.1912 5.2026 0.9263 9 8 5.9265 6.0217 1.7806 10 6 7.5688 5.1684 0.3164 11 16 8.5912 6.4625 1.0620 12 6 10.1002 6.2003 0.1910 13 1 10.1673 5.4166 -0.5490 14 6 11.2022 7.0017 0.4552 15 7 11.1203 7.9572 1.3567 16 14 12.8023 6.7232 -0.4677 17 1 12.8110 7.5472 -1.7031 18 1 13.9460 7.1132 0.3955 19 1 12.9219 5.2878 -0.8293 20 8 2.2910 3.3942 -0.5958 21 7 1.7265 2.3561 -0.8523 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.3965 1.5367 1.7808 28 1 3.4594 5.3301 0.9304 29 1 3.9876 4.1877 2.1892 30 1 5.4652 3.6677 -0.1607 31 1 8.0238 4.1951 0.5008 32 1 7.4949 5.3371 -0.7579 33 1 11.8906 8.5170 1.5417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610155165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = -10.489987 kcal Electronic energy + Delta-G solvation = -17169.295038 eV Core-core repulsion = 14130.485771 eV Total energy + Delta-G solvation = -3038.809267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.00503 -40.63417 -36.52108 -36.37278 -34.57167 -33.36141 -32.16023 -30.90302 -27.80457 -27.22550 -25.33852 -24.02231 -21.89124 -20.92167 -19.85293 -18.73214 -18.53783 -17.70820 -17.09179 -16.86394 -16.65440 -15.83304 -15.69418 -15.32769 -14.88765 -14.74254 -14.50863 -14.43095 -13.91158 -13.40873 -13.29136 -13.15227 -12.88233 -12.61610 -12.58411 -12.47383 -11.86244 -11.72971 -11.21928 -11.13149 -11.01088 -10.51544 -10.26329 -10.25738 -8.64702 -8.33528 -6.11024 0.23884 1.16067 1.30257 1.43496 1.48847 1.57407 1.58789 1.93208 2.28023 2.39958 3.00780 3.18509 3.30123 3.33029 3.88623 3.95350 4.11280 4.21264 4.28620 4.31975 4.40329 4.53026 4.54580 4.67406 4.75092 4.97953 5.06771 5.09032 5.23031 5.31966 5.43614 6.21184 6.37694 7.08154 7.14999 7.19808 8.75506 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045791 B = 0.002904 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.320627 B = 9639.407897 C = 9986.427405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.013 3.987 4 C -0.197 4.197 5 C -0.048 4.048 6 C 0.207 3.793 7 N -0.713 5.713 8 C 0.542 3.458 9 O -0.557 6.557 10 C -0.131 4.131 11 S -0.148 6.148 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.258 1.258 20 O 0.087 5.913 21 N -0.386 5.386 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.202 0.798 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.543 -17.814 -2.827 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.219 4.219 5 C -0.112 4.112 6 C 0.083 3.917 7 N -0.369 5.369 8 C 0.328 3.672 9 O -0.434 6.434 10 C -0.282 4.282 11 S 0.080 5.920 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.182 1.182 20 O 0.022 5.978 21 N -0.091 5.091 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.130 0.870 27 H 0.219 0.781 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.253 0.747 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.723 -16.268 -2.397 24.919 hybrid contribution 1.679 -1.047 -1.004 2.219 sum -17.044 -17.315 -3.401 24.533 Atomic orbital electron populations 1.21720 0.93984 1.03193 1.01583 1.20154 0.96646 0.86430 1.05253 1.24207 0.98250 0.99230 0.92817 1.22921 1.02238 0.92836 1.03868 1.24348 0.98347 0.97846 0.90635 1.19607 0.79298 0.95330 0.97486 1.45740 1.10782 1.36534 1.43810 1.19967 0.85814 0.79963 0.81459 1.90718 1.81180 1.38561 1.32987 1.23375 0.95123 1.05058 1.04634 1.85547 1.08617 1.42920 1.54958 1.23204 0.97713 1.21925 1.26567 0.89912 1.26107 1.02936 0.93982 0.96128 1.70173 1.32299 1.19545 1.32686 0.84969 0.76074 0.79220 0.77811 1.19438 1.20335 1.18207 1.84844 1.45056 1.29876 1.38052 1.73858 1.17816 0.93834 1.23621 0.89787 0.92839 0.93813 0.89251 0.87044 0.78141 0.89347 0.86771 0.74731 0.86889 0.87225 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.88 71.98 0.71 -0.90 16 2 C -0.05 -0.51 6.53 29.85 0.19 -0.31 16 3 C 0.01 0.23 6.59 43.57 0.29 0.52 16 4 C -0.20 -2.89 11.05 22.40 0.25 -2.65 16 5 C -0.05 -0.86 6.86 25.04 0.17 -0.69 16 6 C 0.21 4.02 6.24 85.64 0.53 4.56 16 7 N -0.71 -16.30 5.55 -466.79 -2.59 -18.89 16 8 C 0.54 18.45 7.85 87.66 0.69 19.13 16 9 O -0.56 -23.92 15.86 -3.04 -0.05 -23.97 16 10 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 11 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 12 C -0.55 -30.66 9.50 67.95 0.65 -30.02 16 13 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 14 C 0.01 0.75 5.49 84.86 0.47 1.21 16 15 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 16 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 O 0.09 1.95 11.20 71.63 0.80 2.75 16 21 N -0.39 -8.68 12.06 -49.54 -0.60 -9.28 16 22 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.42 7.36 8.46 -92.71 -0.78 6.58 16 31 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 33 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -75.04 311.38 3.45 -71.59 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.34 Total: 10.46 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.38 Total: -13.62 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.90 Total: -83.21 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.75 Total: -21.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -75.04 3.45 -71.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610155165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.100 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds