Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42887 * 114.00213 * 2 1 4 4 C 1.53008 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46992 * 65.00536 * 4 3 2 6 6 C 1.46504 * 119.99317 * 274.62471 * 5 4 3 7 7 C 1.50699 * 109.46799 * 263.88204 * 6 5 4 8 8 H 1.08005 * 120.00042 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00078 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99998 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46892 * 60.00262 * 11 9 7 13 13 H 1.48504 * 109.46934 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47484 * 300.00054 * 11 9 7 15 15 C 1.34774 * 120.00028 * 94.62157 * 5 4 3 16 16 O 1.21611 * 120.00244 * 354.51310 * 15 5 4 17 17 C 1.47262 * 119.99601 * 174.78845 * 15 5 4 18 18 N 1.30556 * 125.54159 * 4.01617 * 17 15 5 19 19 C 1.30701 * 115.90787 * 179.77829 * 18 17 15 20 20 C 1.34239 * 115.77994 * 0.51877 * 19 18 17 21 21 S 1.71070 * 109.09086 * 359.72080 * 20 19 18 22 22 H 1.08996 * 109.47520 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46719 * 300.00169 * 1 2 3 24 24 H 1.08997 * 109.46875 * 59.99494 * 1 2 3 25 25 H 1.09008 * 109.47422 * 60.00349 * 3 2 1 26 26 H 1.08994 * 109.47810 * 300.00342 * 3 2 1 27 27 H 1.08999 * 109.47184 * 305.00352 * 4 3 2 28 28 H 1.09002 * 109.46829 * 185.00106 * 4 3 2 29 29 H 1.08996 * 109.47258 * 23.88462 * 6 5 4 30 30 H 1.09000 * 109.46811 * 143.88396 * 6 5 4 31 31 H 0.96998 * 119.99606 * 179.97438 * 10 9 7 32 32 H 1.07998 * 122.11402 * 180.21583 * 19 18 17 33 33 H 1.07997 * 125.45357 * 179.72592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.0093 -0.8957 -1.3730 7 6 5.4019 -1.3931 -1.0829 8 1 6.1844 -0.6922 -0.8322 9 6 5.6772 -2.7431 -1.1375 10 7 4.7244 -3.5966 -1.4432 11 14 7.4036 -3.3595 -0.7785 12 1 7.7915 -2.9698 0.6010 13 1 7.4365 -4.8390 -0.9021 14 1 8.3550 -2.7600 -1.7483 15 6 4.3526 1.3356 -2.2899 16 8 4.2316 2.5439 -2.2250 17 6 4.9042 0.7152 -3.5063 18 7 5.0079 -0.5680 -3.7236 19 6 5.5236 -0.9125 -4.8741 20 6 5.8889 0.0996 -5.6766 21 16 5.5382 1.5835 -4.9009 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6888 1.8463 0.8901 26 1 1.6887 1.8463 -0.8899 27 1 3.8509 0.5682 0.8426 28 1 3.9786 2.1763 0.0902 29 1 3.3107 -1.3355 -0.6612 30 1 3.7248 -1.1820 -2.3855 31 1 4.9182 -4.5462 -1.4820 32 1 5.6524 -1.9462 -5.1590 33 1 6.3331 -0.0060 -6.6554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618377509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -13.463796 kcal Electronic energy + Delta-G solvation = -19054.204786 eV Core-core repulsion = 16015.266564 eV Total energy + Delta-G solvation = -3038.938221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64266 -38.41533 -37.30963 -34.87822 -32.43796 -30.69745 -29.12997 -26.97788 -26.16067 -25.28410 -22.78604 -22.64688 -20.67456 -18.76231 -17.37197 -16.55705 -16.26291 -15.87498 -15.58862 -15.03158 -14.75342 -14.54893 -14.24274 -14.12828 -13.16088 -13.00319 -12.85799 -12.23063 -11.91863 -11.70795 -11.50130 -11.39222 -11.03176 -10.86038 -10.80697 -10.48651 -10.09840 -9.67981 -9.51351 -9.31625 -9.13214 -8.70260 -8.42347 -8.19068 -7.65123 -5.91317 -3.91319 0.82690 1.69186 2.19382 3.02818 3.34822 3.39043 3.42348 3.87580 3.96927 4.19791 4.50953 4.85068 5.40303 5.42303 5.44625 5.49548 5.57727 5.67391 5.68892 5.71757 5.84894 5.90471 6.04333 6.34505 6.56658 6.89867 7.51224 7.66535 7.78984 8.00002 8.23977 8.34275 8.37181 8.83610 9.09434 9.68458 11.16969 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.010224 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.352679 B = 2737.911173 C = 4398.300537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.560 5.560 6 C 0.232 3.768 7 C -0.505 4.505 8 H 0.048 0.952 9 C 0.071 3.929 10 N -0.888 5.888 11 Si 0.884 3.116 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.280 1.280 15 C 0.589 3.411 16 O -0.572 6.572 17 C 0.007 3.993 18 N -0.351 5.351 19 C 0.033 3.967 20 C -0.289 4.289 21 S 0.168 5.832 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.259 0.741 32 H 0.171 0.829 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 7.422 -3.653 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.288 5.288 6 C 0.113 3.887 7 C -0.545 4.545 8 H 0.067 0.933 9 C -0.131 4.131 10 N -0.527 5.527 11 Si 0.712 3.288 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.206 1.206 15 C 0.374 3.626 16 O -0.454 6.454 17 C -0.269 4.269 18 N -0.066 5.066 19 C -0.124 4.124 20 C -0.430 4.430 21 S 0.422 5.578 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.188 0.812 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.440 8.338 -3.458 9.660 hybrid contribution 1.093 -1.422 -0.186 1.803 sum -2.347 6.916 -3.644 8.162 Atomic orbital electron populations 1.22681 0.82139 1.02460 0.99100 1.88085 1.18690 1.27196 1.95187 1.22992 0.94944 0.85138 0.99895 1.21482 0.91502 0.99716 0.87694 1.48140 1.59544 1.10626 1.10522 1.19976 0.97382 0.70805 1.00559 1.21220 0.95194 0.91874 1.46177 0.93326 1.24725 0.96259 0.96619 0.95474 1.69926 1.31829 1.02220 1.48769 0.86802 0.85664 0.77566 0.78730 1.20497 1.21372 1.20630 1.16829 0.78330 0.85465 0.82005 1.90725 1.58839 1.13591 1.82207 1.27756 1.07776 0.91483 0.99883 1.67490 1.10690 1.12601 1.15860 1.22027 0.99766 1.01353 0.89285 1.26736 1.11737 0.97477 1.07069 1.83680 1.54492 1.08801 1.10859 0.89812 0.94751 0.94654 0.93023 0.93278 0.89161 0.89104 0.93576 0.91302 0.93102 0.81244 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.79 9.21 -35.23 -0.32 -7.12 16 3 C 0.05 0.79 6.28 37.16 0.23 1.02 16 4 C 0.12 2.22 5.84 -4.04 -0.02 2.20 16 5 N -0.56 -12.42 2.46 -176.39 -0.43 -12.85 16 6 C 0.23 5.85 4.51 -5.19 -0.02 5.83 16 7 C -0.51 -13.68 7.93 -34.44 -0.27 -13.96 16 8 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 9 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 10 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 11 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.59 13.06 7.60 -12.59 -0.10 12.96 16 16 O -0.57 -12.78 16.51 5.27 0.09 -12.69 16 17 C 0.01 0.15 7.11 -14.43 -0.10 0.05 16 18 N -0.35 -7.73 6.09 -11.50 -0.07 -7.80 16 19 C 0.03 0.60 11.24 -19.44 -0.22 0.38 16 20 C -0.29 -4.36 11.09 29.32 0.33 -4.03 16 21 S 0.17 2.74 23.03 -107.50 -2.48 0.27 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 28 H 0.09 1.56 7.36 -51.93 -0.38 1.18 16 29 H 0.05 1.25 6.83 -51.93 -0.35 0.90 16 30 H 0.07 1.86 5.68 -51.93 -0.29 1.56 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 33 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -31.29 300.46 -6.09 -37.39 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.96 Total: -1.45 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 0.84 Total: 7.87 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.23 Total: -45.22 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.24 Total: -19.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.48 Total: 0.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.29 -6.09 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618377509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.923 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds