Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42887 * 114.00213 * 2 1 4 4 C 1.53008 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46992 * 65.00536 * 4 3 2 6 6 C 1.46504 * 119.99317 * 274.62471 * 5 4 3 7 7 C 1.50699 * 109.46799 * 263.88204 * 6 5 4 8 8 H 1.08005 * 120.00042 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00078 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99998 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46892 * 60.00262 * 11 9 7 13 13 H 1.48504 * 109.46934 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47484 * 300.00054 * 11 9 7 15 15 C 1.34774 * 120.00028 * 94.62157 * 5 4 3 16 16 O 1.21611 * 120.00244 * 354.51310 * 15 5 4 17 17 C 1.47262 * 119.99601 * 174.78845 * 15 5 4 18 18 N 1.30556 * 125.54159 * 4.01617 * 17 15 5 19 19 C 1.30701 * 115.90787 * 179.77829 * 18 17 15 20 20 C 1.34239 * 115.77994 * 0.51877 * 19 18 17 21 21 S 1.71070 * 109.09086 * 359.72080 * 20 19 18 22 22 H 1.08996 * 109.47520 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46719 * 300.00169 * 1 2 3 24 24 H 1.08997 * 109.46875 * 59.99494 * 1 2 3 25 25 H 1.09008 * 109.47422 * 60.00349 * 3 2 1 26 26 H 1.08994 * 109.47810 * 300.00342 * 3 2 1 27 27 H 1.08999 * 109.47184 * 305.00352 * 4 3 2 28 28 H 1.09002 * 109.46829 * 185.00106 * 4 3 2 29 29 H 1.08996 * 109.47258 * 23.88462 * 6 5 4 30 30 H 1.09000 * 109.46811 * 143.88396 * 6 5 4 31 31 H 0.96998 * 119.99606 * 179.97438 * 10 9 7 32 32 H 1.07998 * 122.11402 * 180.21583 * 19 18 17 33 33 H 1.07997 * 125.45357 * 179.72592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.0093 -0.8957 -1.3730 7 6 5.4019 -1.3931 -1.0829 8 1 6.1844 -0.6922 -0.8322 9 6 5.6772 -2.7431 -1.1375 10 7 4.7244 -3.5966 -1.4432 11 14 7.4036 -3.3595 -0.7785 12 1 7.7915 -2.9698 0.6010 13 1 7.4365 -4.8390 -0.9021 14 1 8.3550 -2.7600 -1.7483 15 6 4.3526 1.3356 -2.2899 16 8 4.2316 2.5439 -2.2250 17 6 4.9042 0.7152 -3.5063 18 7 5.0079 -0.5680 -3.7236 19 6 5.5236 -0.9125 -4.8741 20 6 5.8889 0.0996 -5.6766 21 16 5.5382 1.5835 -4.9009 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6888 1.8463 0.8901 26 1 1.6887 1.8463 -0.8899 27 1 3.8509 0.5682 0.8426 28 1 3.9786 2.1763 0.0902 29 1 3.3107 -1.3355 -0.6612 30 1 3.7248 -1.1820 -2.3855 31 1 4.9182 -4.5462 -1.4820 32 1 5.6524 -1.9462 -5.1590 33 1 6.3331 -0.0060 -6.6554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618377509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -34.251545 kcal Electronic energy + Delta-G solvation = -19055.106210 eV Core-core repulsion = 16015.266564 eV Total energy + Delta-G solvation = -3039.839646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20710 -39.91257 -38.67347 -36.60279 -34.44881 -32.15985 -30.58647 -28.86891 -27.43425 -26.71071 -24.74649 -24.06788 -22.16389 -20.24606 -18.92685 -18.47949 -17.76221 -17.38516 -17.01561 -16.55188 -16.40477 -16.13378 -15.77959 -15.55758 -14.65075 -14.55769 -14.20299 -14.13891 -13.51674 -13.30083 -13.05870 -12.78412 -12.71676 -12.61900 -12.32703 -12.09355 -11.92672 -11.61976 -11.28469 -10.58960 -10.58198 -10.43164 -10.02843 -9.82980 -9.38713 -8.00853 -6.07448 -0.58558 0.31100 0.84918 1.41391 1.41626 1.48244 1.52469 2.30721 2.40236 2.51545 2.96478 3.30809 3.34822 4.07168 4.14798 4.26250 4.35608 4.39888 4.50916 4.54036 4.57218 4.61730 4.86184 4.89727 5.13726 5.17300 5.56824 5.89708 5.93237 6.29002 6.30772 6.52290 6.79491 6.99797 7.21060 7.56022 9.06648 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.010224 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.352679 B = 2737.911173 C = 4398.300537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.112 3.888 5 N -0.569 5.569 6 C 0.257 3.743 7 C -0.506 4.506 8 H 0.035 0.965 9 C 0.031 3.969 10 N -0.916 5.916 11 Si 0.940 3.060 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.585 3.415 16 O -0.582 6.582 17 C -0.051 4.051 18 N -0.389 5.389 19 C -0.003 4.003 20 C -0.250 4.250 21 S 0.235 5.765 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.260 0.740 32 H 0.178 0.822 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 8.305 -4.728 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.298 5.298 6 C 0.137 3.863 7 C -0.546 4.546 8 H 0.053 0.947 9 C -0.169 4.169 10 N -0.557 5.557 11 Si 0.767 3.233 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.370 3.630 16 O -0.465 6.465 17 C -0.325 4.325 18 N -0.105 5.105 19 C -0.160 4.160 20 C -0.390 4.390 21 S 0.489 5.511 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.631 9.242 -4.508 10.614 hybrid contribution 0.845 -1.612 0.014 1.820 sum -1.786 7.630 -4.494 9.033 Atomic orbital electron populations 1.22865 0.79991 1.03266 1.00667 1.88031 1.21201 1.28323 1.95489 1.22935 0.93206 0.84834 1.01218 1.21700 0.93426 0.99786 0.86153 1.48111 1.60166 1.09548 1.11935 1.19418 0.95755 0.72603 0.98570 1.21290 0.95534 0.91860 1.45872 0.94652 1.25335 0.99411 0.96746 0.95371 1.70033 1.33491 1.02365 1.49771 0.85908 0.81687 0.77201 0.78502 1.20151 1.20752 1.20489 1.17085 0.77971 0.85456 0.82465 1.90687 1.59494 1.13669 1.82652 1.27605 1.10976 0.92320 1.01621 1.67356 1.11394 1.13796 1.17988 1.22206 1.01744 1.02671 0.89361 1.27291 1.07931 0.96040 1.07786 1.83396 1.52032 1.07972 1.07731 0.89515 0.92112 0.94035 0.89375 0.93978 0.89810 0.87921 0.96134 0.93070 0.93091 0.80519 0.76125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.13 9.21 -148.98 -1.37 -16.50 16 3 C 0.06 1.80 6.28 71.98 0.45 2.25 16 4 C 0.11 4.22 5.84 86.38 0.50 4.72 16 5 N -0.57 -25.96 2.46 -830.22 -2.04 -28.00 16 6 C 0.26 13.48 4.51 85.63 0.39 13.86 16 7 C -0.51 -28.08 7.93 25.60 0.20 -27.88 16 8 H 0.04 2.01 7.81 -2.91 -0.02 1.99 16 9 C 0.03 1.70 5.46 84.65 0.46 2.16 16 10 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 11 Si 0.94 44.25 29.54 68.60 2.03 46.27 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.58 26.29 7.60 86.62 0.66 26.95 16 16 O -0.58 -26.01 16.51 -4.07 -0.07 -26.08 16 17 C -0.05 -2.17 7.11 87.26 0.62 -1.55 16 18 N -0.39 -17.28 6.09 -190.31 -1.16 -18.43 16 19 C 0.00 -0.11 11.24 83.95 0.94 0.83 16 20 C -0.25 -6.67 11.09 66.91 0.74 -5.93 16 21 S 0.24 7.12 23.03 -56.49 -1.30 5.82 16 22 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 3.19 8.11 -2.39 -0.02 3.17 16 28 H 0.10 3.54 7.36 -2.39 -0.02 3.52 16 29 H 0.02 1.17 6.83 -2.39 -0.02 1.16 16 30 H 0.05 2.90 5.68 -2.39 -0.01 2.88 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.18 5.79 8.06 -2.91 -0.02 5.76 16 33 H 0.22 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -68.86 300.46 3.71 -65.15 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.12 Total: 7.26 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 6.22 Total: 17.42 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -2.92 Total: -99.34 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.44 Total: -42.58 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -1.30 Total: 5.82 kcal Total: -68.86 3.71 -65.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618377509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.897 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds