Wall clock time and date at job start Mon Mar 30 2020 01:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.93295 * 2 1 4 4 C 1.51130 * 110.02673 * 238.76276 * 2 1 3 5 5 C 1.34209 * 127.60278 * 71.25354 * 4 2 1 6 6 C 1.41048 * 107.28813 * 180.32422 * 5 4 2 7 7 C 1.34971 * 107.46614 * 359.89589 * 6 5 4 8 8 N 1.36088 * 108.26424 * 359.86239 * 7 6 5 9 9 C 1.46706 * 126.92535 * 180.61349 * 8 7 6 10 10 C 1.52694 * 109.26566 * 198.36867 * 9 8 7 11 11 N 1.47056 * 109.58251 * 313.90365 * 10 9 8 12 12 S 1.65607 * 120.98065 * 244.08955 * 11 10 9 13 13 O 1.42097 * 106.40132 * 156.18013 * 12 11 10 14 14 O 1.42107 * 106.39904 * 23.26285 * 12 11 10 15 15 C 1.76199 * 107.21942 * 269.72186 * 12 11 10 16 16 H 1.08000 * 119.99782 * 359.97438 * 15 12 11 17 17 C 1.37872 * 119.99956 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00060 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99957 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47196 * 89.99970 * 19 17 15 21 21 H 1.48502 * 109.47265 * 210.00296 * 19 17 15 22 22 H 1.48503 * 109.47102 * 329.99934 * 19 17 15 23 23 H 1.08998 * 109.47124 * 298.81151 * 1 2 3 24 24 H 1.08999 * 109.47307 * 58.81941 * 1 2 3 25 25 H 1.09006 * 109.46963 * 178.81264 * 1 2 3 26 26 H 1.08003 * 126.35353 * 0.32156 * 5 4 2 27 27 H 1.07999 * 126.26819 * 179.97438 * 6 5 4 28 28 H 1.07995 * 125.86847 * 179.89912 * 7 6 5 29 29 H 1.09003 * 109.51236 * 318.44541 * 9 8 7 30 30 H 1.09002 * 109.51239 * 78.54514 * 9 8 7 31 31 H 1.08993 * 109.36276 * 193.86125 * 10 9 8 32 32 H 1.09001 * 109.34657 * 73.92905 * 10 9 8 33 33 H 0.97000 * 119.99617 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9016 1.0247 0.0000 4 6 2.0476 -0.7363 -1.2141 5 6 2.0070 -0.3351 -2.4941 6 6 2.6010 -1.3515 -3.2710 7 6 2.9833 -2.3342 -2.4285 8 7 2.6514 -1.9633 -1.1619 9 6 2.8919 -2.7222 0.0703 10 6 1.9850 -2.1875 1.1763 11 7 2.0332 -0.7178 1.1859 12 16 2.6411 0.1067 2.4872 13 8 3.0635 1.3724 1.9986 14 8 3.5075 -0.7939 3.1637 15 6 1.2958 0.4194 3.5813 16 1 0.3027 0.0795 3.3269 17 6 1.5109 1.0979 4.7620 18 7 2.7202 1.5114 5.0720 19 14 0.0847 1.4288 5.9223 20 1 -0.0442 0.3029 6.8818 21 1 0.3352 2.6884 6.6679 22 1 -1.1705 1.5583 5.1394 23 1 -0.3633 0.4953 0.9004 24 1 -0.3634 0.5320 -0.8792 25 1 -0.3633 -1.0275 -0.0213 26 1 1.5957 0.5936 -2.8612 27 1 2.7280 -1.3441 -4.3435 28 1 3.4696 -3.2562 -2.7109 29 1 2.6751 -3.7763 -0.1031 30 1 3.9338 -2.6093 0.3700 31 1 2.3255 -2.5691 2.1389 32 1 0.9618 -2.5168 0.9951 33 1 2.8714 1.9891 5.9025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687812909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:52 Heat of formation + Delta-G solvation = -34.659996 kcal Electronic energy + Delta-G solvation = -19496.771217 eV Core-core repulsion = 16456.913860 eV Total energy + Delta-G solvation = -3039.857357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18259 -36.47315 -35.44360 -34.05414 -33.36742 -33.13740 -30.13544 -28.02459 -27.42506 -26.17855 -23.30223 -22.22566 -20.35429 -18.87469 -18.28896 -17.27731 -16.84938 -16.29627 -15.60872 -15.01162 -14.69941 -14.16004 -13.64260 -13.51042 -13.43736 -13.04936 -12.78337 -12.16289 -12.02162 -11.92831 -11.81070 -11.63835 -11.40252 -11.26023 -11.19625 -10.91481 -10.63895 -10.38390 -10.24693 -10.17901 -9.30060 -9.05392 -8.49818 -8.28939 -7.72626 -6.75425 -5.38405 2.09396 2.53143 3.03132 3.09562 3.14998 3.20019 3.29042 3.99727 4.34108 4.58413 4.85516 4.98111 5.15753 5.21520 5.31749 5.55974 5.61565 5.74268 5.80897 5.85631 5.89617 5.93736 6.03077 6.13930 6.30902 6.42532 6.52952 6.59035 6.71828 7.24147 7.27262 7.41227 7.53690 7.65831 7.91610 8.83283 10.18458 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.006517 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.346604 B = 4295.572543 C = 4502.317771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.118 0.882 4 C 0.027 3.973 5 C -0.198 4.198 6 C -0.205 4.205 7 C -0.020 4.020 8 N -0.439 5.439 9 C 0.088 3.912 10 C 0.114 3.886 11 N -1.012 6.012 12 S 2.713 3.287 13 O -0.998 6.998 14 O -1.002 7.002 15 C -1.018 5.018 16 H 0.104 0.896 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.921 3.079 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.262 1.262 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -6.983 -9.876 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.135 0.865 4 C -0.087 4.087 5 C -0.223 4.223 6 C -0.230 4.230 7 C -0.150 4.150 8 N -0.115 5.115 9 C -0.035 4.035 10 C -0.013 4.013 11 N -0.845 5.845 12 S 2.815 3.185 13 O -0.989 6.989 14 O -0.993 6.993 15 C -1.151 5.151 16 H 0.122 0.878 17 C -0.086 4.086 18 N -0.475 5.475 19 Si 0.745 3.255 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.186 1.186 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.174 0.826 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.801 -6.879 -9.322 11.919 hybrid contribution -1.212 0.000 0.715 1.407 sum -4.013 -6.879 -8.607 11.726 Atomic orbital electron populations 1.22123 0.94245 1.02226 1.02824 1.19649 0.93890 0.95836 0.79853 0.86475 1.20633 1.03751 0.88100 0.96178 1.20403 1.09060 1.01206 0.91590 1.20819 1.07858 0.95735 0.98587 1.21654 1.08622 1.01756 0.83002 1.44078 1.45560 1.15766 1.06147 1.22286 1.01975 0.95649 0.83602 1.21312 0.99248 0.81564 0.99148 1.58573 1.80389 1.13098 1.32455 1.00633 0.74897 0.71844 0.71161 1.93358 1.82697 1.41960 1.80865 1.93351 1.66525 1.66457 1.72952 1.30567 1.14354 1.50516 1.19684 0.87802 1.24763 0.96958 0.90196 0.96637 1.69895 1.21178 1.31437 1.24988 0.86149 0.81231 0.78483 0.79632 1.19197 1.19926 1.18595 0.90849 0.91536 0.92666 0.84754 0.85064 0.82610 0.88988 0.89810 0.87059 0.91048 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.44 37.16 0.35 -2.02 16 2 C 0.21 3.91 3.34 -68.34 -0.23 3.68 16 3 H 0.12 2.29 6.98 -51.93 -0.36 1.93 16 4 C 0.03 0.46 5.97 -81.56 -0.49 -0.03 16 5 C -0.20 -3.08 10.81 -39.94 -0.43 -3.51 16 6 C -0.20 -2.89 10.87 -39.68 -0.43 -3.32 16 7 C -0.02 -0.28 11.49 -16.82 -0.19 -0.48 16 8 N -0.44 -6.90 3.15 -112.47 -0.35 -7.26 16 9 C 0.09 1.25 7.10 -4.09 -0.03 1.22 16 10 C 0.11 1.85 6.22 -3.90 -0.02 1.83 16 11 N -1.01 -20.27 2.96 -107.37 -0.32 -20.59 16 12 S 2.71 70.60 5.02 -107.50 -0.54 70.06 16 13 O -1.00 -28.85 16.66 -57.17 -0.95 -29.81 16 14 O -1.00 -28.28 16.73 -57.17 -0.96 -29.24 16 15 C -1.02 -27.15 9.75 30.60 0.30 -26.85 16 16 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 17 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 18 N -0.85 -24.49 13.19 55.43 0.73 -23.76 16 19 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.79 7.54 -51.93 -0.39 0.40 16 26 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.11 1.82 7.09 -51.93 -0.37 1.45 16 32 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 33 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -34.44 291.02 -8.31 -42.75 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.02 Total: 4.32 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -1.27 Total: -25.98 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.06 Total: -51.61 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -1.91 Total: -59.04 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 70.60 SS G_CDS: -0.54 Total: 70.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.44 -8.31 -42.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687812909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.094 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds