Wall clock time and date at job start Mon Mar 30 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.93295 * 2 1 4 4 C 1.51130 * 110.02673 * 238.76276 * 2 1 3 5 5 C 1.34209 * 127.60278 * 71.25354 * 4 2 1 6 6 C 1.41048 * 107.28813 * 180.32422 * 5 4 2 7 7 C 1.34971 * 107.46614 * 359.89589 * 6 5 4 8 8 N 1.36088 * 108.26424 * 359.86239 * 7 6 5 9 9 C 1.46706 * 126.92535 * 180.61349 * 8 7 6 10 10 C 1.52694 * 109.26566 * 198.36867 * 9 8 7 11 11 N 1.47056 * 109.58251 * 313.90365 * 10 9 8 12 12 S 1.65607 * 120.98065 * 244.08955 * 11 10 9 13 13 O 1.42097 * 106.40132 * 156.18013 * 12 11 10 14 14 O 1.42107 * 106.39904 * 23.26285 * 12 11 10 15 15 C 1.76199 * 107.21942 * 269.72186 * 12 11 10 16 16 H 1.08000 * 119.99782 * 359.97438 * 15 12 11 17 17 C 1.37872 * 119.99956 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00060 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99957 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47196 * 89.99970 * 19 17 15 21 21 H 1.48502 * 109.47265 * 210.00296 * 19 17 15 22 22 H 1.48503 * 109.47102 * 329.99934 * 19 17 15 23 23 H 1.08998 * 109.47124 * 298.81151 * 1 2 3 24 24 H 1.08999 * 109.47307 * 58.81941 * 1 2 3 25 25 H 1.09006 * 109.46963 * 178.81264 * 1 2 3 26 26 H 1.08003 * 126.35353 * 0.32156 * 5 4 2 27 27 H 1.07999 * 126.26819 * 179.97438 * 6 5 4 28 28 H 1.07995 * 125.86847 * 179.89912 * 7 6 5 29 29 H 1.09003 * 109.51236 * 318.44541 * 9 8 7 30 30 H 1.09002 * 109.51239 * 78.54514 * 9 8 7 31 31 H 1.08993 * 109.36276 * 193.86125 * 10 9 8 32 32 H 1.09001 * 109.34657 * 73.92905 * 10 9 8 33 33 H 0.97000 * 119.99617 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9016 1.0247 0.0000 4 6 2.0476 -0.7363 -1.2141 5 6 2.0070 -0.3351 -2.4941 6 6 2.6010 -1.3515 -3.2710 7 6 2.9833 -2.3342 -2.4285 8 7 2.6514 -1.9633 -1.1619 9 6 2.8919 -2.7222 0.0703 10 6 1.9850 -2.1875 1.1763 11 7 2.0332 -0.7178 1.1859 12 16 2.6411 0.1067 2.4872 13 8 3.0635 1.3724 1.9986 14 8 3.5075 -0.7939 3.1637 15 6 1.2958 0.4194 3.5813 16 1 0.3027 0.0795 3.3269 17 6 1.5109 1.0979 4.7620 18 7 2.7202 1.5114 5.0720 19 14 0.0847 1.4288 5.9223 20 1 -0.0442 0.3029 6.8818 21 1 0.3352 2.6884 6.6679 22 1 -1.1705 1.5583 5.1394 23 1 -0.3633 0.4953 0.9004 24 1 -0.3634 0.5320 -0.8792 25 1 -0.3633 -1.0275 -0.0213 26 1 1.5957 0.5936 -2.8612 27 1 2.7280 -1.3441 -4.3435 28 1 3.4696 -3.2562 -2.7109 29 1 2.6751 -3.7763 -0.1031 30 1 3.9338 -2.6093 0.3700 31 1 2.3255 -2.5691 2.1389 32 1 0.9618 -2.5168 0.9951 33 1 2.8714 1.9891 5.9025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687812909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:51 Heat of formation + Delta-G solvation = -59.665756 kcal Electronic energy + Delta-G solvation = -19497.855548 eV Core-core repulsion = 16456.913860 eV Total energy + Delta-G solvation = -3040.941689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.34055 -37.84673 -37.56705 -36.20821 -35.19953 -34.60269 -31.43625 -29.25256 -28.64728 -28.25573 -24.55290 -23.57115 -21.49806 -20.74925 -19.83567 -18.64727 -18.55127 -17.98279 -17.10472 -16.79125 -16.18479 -15.90304 -15.31739 -14.92085 -14.68957 -14.34740 -14.07173 -13.99923 -13.45498 -13.30110 -13.05072 -13.03243 -12.99424 -12.82463 -12.69744 -12.56250 -12.51209 -12.31442 -12.10224 -11.79980 -11.26693 -11.02443 -10.07663 -9.44281 -8.88132 -8.77244 -7.51288 0.17944 1.33515 1.34050 1.37796 1.50541 2.01879 2.17057 2.20195 2.55852 2.71965 3.61782 3.64200 3.77384 3.91379 4.05315 4.24413 4.32300 4.39211 4.43574 4.45412 4.69799 4.76157 4.80502 4.82911 4.91361 5.10852 5.23435 5.32821 5.44200 5.48041 5.76305 5.88851 6.20180 6.33125 6.57829 6.75833 8.18608 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.006517 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.346604 B = 4295.572543 C = 4502.317771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.210 3.790 3 H 0.089 0.911 4 C -0.007 4.007 5 C -0.202 4.202 6 C -0.216 4.216 7 C -0.013 4.013 8 N -0.449 5.449 9 C 0.088 3.912 10 C 0.104 3.896 11 N -1.009 6.009 12 S 2.716 3.284 13 O -1.041 7.041 14 O -1.036 7.036 15 C -1.033 5.033 16 H 0.123 0.877 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.991 3.009 20 H -0.253 1.253 21 H -0.265 1.265 22 H -0.246 1.246 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.192 0.808 29 H 0.139 0.861 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -8.557 -10.938 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.104 3.896 3 H 0.107 0.893 4 C -0.120 4.120 5 C -0.227 4.227 6 C -0.240 4.240 7 C -0.142 4.142 8 N -0.125 5.125 9 C -0.035 4.035 10 C -0.022 4.022 11 N -0.846 5.846 12 S 2.820 3.180 13 O -1.031 7.031 14 O -1.026 7.026 15 C -1.167 5.167 16 H 0.141 0.859 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.809 3.191 20 H -0.177 1.177 21 H -0.189 1.189 22 H -0.169 1.169 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.162 0.838 27 H 0.173 0.827 28 H 0.209 0.791 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.571 -8.461 -10.399 14.164 hybrid contribution -0.611 0.439 0.915 1.184 sum -5.182 -8.023 -9.484 13.460 Atomic orbital electron populations 1.22078 0.92057 1.03260 1.03264 1.19733 0.95614 0.94584 0.79697 0.89292 1.20535 1.06142 0.89338 0.95940 1.20724 1.08613 1.01946 0.91429 1.21177 1.07675 0.95285 0.99905 1.22300 1.07206 1.02758 0.81977 1.44255 1.45629 1.15502 1.07119 1.22377 1.00735 0.97799 0.82542 1.21640 1.01559 0.79002 0.99957 1.58024 1.80324 1.14825 1.31443 1.00106 0.75013 0.71152 0.71745 1.93292 1.83721 1.44397 1.81713 1.93292 1.67964 1.66920 1.74449 1.30900 1.15229 1.50489 1.20050 0.85924 1.26047 1.00025 0.89554 0.98691 1.69996 1.23786 1.32787 1.26180 0.85111 0.77522 0.79064 0.77380 1.17720 1.18887 1.16930 0.92087 0.89283 0.91322 0.83784 0.82650 0.79070 0.84363 0.90975 0.87817 0.88266 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.44 71.98 0.68 -3.69 16 2 C 0.21 7.69 3.34 44.20 0.15 7.83 16 3 H 0.09 3.67 6.98 -2.39 -0.02 3.66 16 4 C -0.01 -0.22 5.97 40.99 0.24 0.03 16 5 C -0.20 -5.97 10.81 22.04 0.24 -5.73 16 6 C -0.22 -5.47 10.87 22.21 0.24 -5.23 16 7 C -0.01 -0.31 11.49 83.28 0.96 0.65 16 8 N -0.45 -13.10 3.15 -509.74 -1.61 -14.70 16 9 C 0.09 2.31 7.10 86.24 0.61 2.92 16 10 C 0.10 3.26 6.22 86.17 0.54 3.80 16 11 N -1.01 -40.85 2.96 -493.62 -1.46 -42.30 16 12 S 2.72 146.38 5.02 -56.49 -0.28 146.10 16 13 O -1.04 -63.24 16.66 -128.00 -2.13 -65.38 16 14 O -1.04 -60.73 16.73 -128.00 -2.14 -62.87 16 15 C -1.03 -55.81 9.75 67.73 0.66 -55.15 16 16 H 0.12 5.92 7.81 -2.91 -0.02 5.89 16 17 C 0.07 3.82 5.46 84.65 0.46 4.29 16 18 N -0.90 -53.31 13.19 21.45 0.28 -53.02 16 19 Si 0.99 40.56 29.54 68.60 2.03 42.59 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.07 1.82 7.54 -2.38 -0.02 1.81 16 26 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 27 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 28 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 3.39 7.09 -2.39 -0.02 3.37 16 32 H 0.10 2.54 7.53 -2.39 -0.02 2.53 16 33 H 0.30 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -76.93 291.02 0.58 -76.35 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.11 Total: 23.52 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 4.78 Total: -50.29 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -2.78 Total: -110.03 kcal Atomic # 8 Polarization: -123.97 SS G_CDS: -4.27 Total: -128.25 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 146.38 SS G_CDS: -0.28 Total: 146.10 kcal Total: -76.93 0.58 -76.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687812909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.688 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds