Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00252 * 2 1 4 4 C 1.53004 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46481 * 65.00376 * 4 3 2 6 6 C 1.46502 * 120.00251 * 90.00109 * 5 4 3 7 7 C 1.50705 * 109.47066 * 95.69063 * 6 5 4 8 8 H 1.08001 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99645 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99504 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47220 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46802 * 120.00817 * 11 9 7 14 14 H 1.48496 * 109.46938 * 240.00302 * 11 9 7 15 15 C 1.34774 * 119.99728 * 269.99467 * 5 4 3 16 16 O 1.21582 * 119.99995 * 5.23758 * 15 5 4 17 17 C 1.47693 * 120.00087 * 185.24107 * 15 5 4 18 18 C 1.39486 * 122.10657 * 185.83166 * 17 15 5 19 19 C 1.34994 * 111.68596 * 179.78165 * 18 17 15 20 20 S 1.71764 * 105.45226 * 0.42596 * 19 18 17 21 21 N 1.30606 * 122.10090 * 6.11033 * 17 15 5 22 22 H 1.09000 * 109.46913 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.47199 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47007 * 300.00054 * 1 2 3 25 25 H 1.09007 * 109.46737 * 59.99661 * 3 2 1 26 26 H 1.09002 * 109.47362 * 300.00102 * 3 2 1 27 27 H 1.08991 * 109.47089 * 305.00016 * 4 3 2 28 28 H 1.08998 * 109.46655 * 184.99763 * 4 3 2 29 29 H 1.08998 * 109.47061 * 215.68890 * 6 5 4 30 30 H 1.08995 * 109.46941 * 335.69698 * 6 5 4 31 31 H 0.97002 * 119.99853 * 179.97438 * 10 9 7 32 32 H 1.08005 * 124.15366 * 359.97438 * 18 17 15 33 33 H 1.08004 * 127.27649 * 180.17198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.2882 1.3998 -2.4131 7 6 5.7712 1.6643 -2.4585 8 1 6.4170 1.2507 -1.6980 9 6 6.3035 2.4333 -3.4715 10 7 5.5172 2.9364 -4.3978 11 14 8.1418 2.7605 -3.5281 12 1 8.8002 2.0866 -2.3803 13 1 8.6998 2.2316 -4.7986 14 1 8.3868 4.2231 -3.4509 15 6 4.0958 -0.7760 -1.3332 16 8 3.7472 -1.4757 -0.4020 17 6 4.6500 -1.3945 -2.5546 18 6 4.6832 -2.7772 -2.7359 19 6 5.2276 -3.1114 -3.9250 20 16 5.6465 -1.6222 -4.6714 21 7 5.1447 -0.6814 -3.5305 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8508 0.5684 0.8426 28 1 3.9785 2.1764 0.0902 29 1 3.9831 0.8842 -3.3237 30 1 3.7528 2.3458 -2.3342 31 1 5.8917 3.4778 -5.1102 32 1 4.3154 -3.4922 -2.0148 33 1 5.3733 -4.1055 -4.3215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705422544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -16.249563 kcal Electronic energy + Delta-G solvation = -19145.458697 eV Core-core repulsion = 16106.399676 eV Total energy + Delta-G solvation = -3039.059021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74264 -37.88668 -36.94022 -34.94024 -32.50014 -31.01698 -29.63790 -26.97829 -26.26943 -25.31876 -22.91648 -22.49171 -20.34203 -18.41624 -17.76287 -16.68321 -16.29005 -15.99849 -15.65935 -15.04087 -14.55518 -14.44314 -14.28737 -13.64435 -13.07487 -12.76636 -12.65973 -12.23077 -12.16458 -11.75125 -11.57929 -11.33095 -10.93179 -10.84507 -10.66133 -10.55137 -10.16130 -9.66646 -9.56409 -9.30554 -9.20861 -8.90419 -8.36113 -8.18538 -7.59527 -6.02627 -4.00766 1.36741 2.13430 2.48221 2.62951 3.26848 3.35350 3.39751 3.96899 4.08955 4.24194 4.45172 5.25250 5.33655 5.40574 5.49776 5.55921 5.65800 5.68419 5.76760 5.83354 5.85352 6.05855 6.17157 6.33466 6.40081 6.85105 7.07630 7.44503 7.52989 7.74119 7.90616 8.25896 8.39696 8.94645 9.11163 9.58373 11.05446 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.008764 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.202258 B = 3193.985701 C = 4493.930235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.581 5.581 6 C 0.241 3.759 7 C -0.491 4.491 8 H 0.053 0.947 9 C 0.067 3.933 10 N -0.891 5.891 11 Si 0.883 3.117 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.592 3.408 16 O -0.548 6.548 17 C 0.031 3.969 18 C -0.133 4.133 19 C -0.311 4.311 20 S 0.402 5.598 21 N -0.406 5.406 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.160 0.840 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -6.430 1.777 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.033 4.033 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.120 3.880 7 C -0.531 4.531 8 H 0.072 0.928 9 C -0.135 4.135 10 N -0.531 5.531 11 Si 0.711 3.289 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.375 3.625 16 O -0.427 6.427 17 C -0.143 4.143 18 C -0.167 4.167 19 C -0.459 4.459 20 S 0.556 5.444 21 N -0.238 5.238 22 H 0.053 0.947 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.177 0.823 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.023 -5.389 0.709 6.762 hybrid contribution 0.180 -0.564 1.167 1.309 sum -3.843 -5.952 1.876 7.329 Atomic orbital electron populations 1.22667 0.82610 1.02094 0.99149 1.88147 1.18128 1.27102 1.95148 1.23053 0.95329 0.85169 0.99781 1.21369 0.91216 0.99387 0.88065 1.48019 1.63335 1.05717 1.14016 1.19704 0.96262 0.89387 0.82648 1.21296 0.92447 1.29602 1.09802 0.92837 1.24771 0.97321 0.96000 0.95396 1.69926 1.34578 1.34754 1.13842 0.86670 0.86229 0.77935 0.78026 1.19938 1.20895 1.21057 1.17166 0.78038 0.82389 0.84898 1.90707 1.51089 1.62211 1.38668 1.21225 1.05531 0.90753 0.96757 1.21309 1.02335 0.94944 0.98122 1.27046 1.09557 1.07616 1.01666 1.80924 1.51063 0.88058 1.24334 1.73924 1.14503 1.29718 1.05621 0.94673 0.90207 0.94800 0.93232 0.93176 0.90139 0.88738 0.92319 0.95431 0.93025 0.82260 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.74 9.27 -48.38 -0.45 -7.19 16 3 C 0.04 0.74 6.28 37.16 0.23 0.98 16 4 C 0.12 2.32 5.82 -4.04 -0.02 2.30 16 5 N -0.58 -12.98 2.45 -176.23 -0.43 -13.41 16 6 C 0.24 5.94 4.75 -5.19 -0.02 5.92 16 7 C -0.49 -13.00 7.50 -34.44 -0.26 -13.26 16 8 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 11 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 C 0.59 13.56 7.30 -12.40 -0.09 13.47 16 16 O -0.55 -13.05 15.24 -7.86 -0.12 -13.17 16 17 C 0.03 0.67 6.42 -84.06 -0.54 0.13 16 18 C -0.13 -2.38 9.98 -40.27 -0.40 -2.78 16 19 C -0.31 -4.69 11.41 29.58 0.34 -4.35 16 20 S 0.40 7.00 23.20 -107.50 -2.49 4.50 16 21 N -0.41 -8.97 6.16 24.85 0.15 -8.82 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.53 7.50 -51.93 -0.39 1.14 16 28 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 29 H 0.06 1.56 5.85 -51.93 -0.30 1.26 16 30 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.16 2.63 8.00 -52.48 -0.42 2.21 16 33 H 0.17 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -31.30 298.73 -6.91 -38.21 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.03 Total: -2.22 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 0.25 Total: 5.63 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.46 Total: -46.24 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.57 Total: -20.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -2.49 Total: 4.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.30 -6.91 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705422544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.956 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds