Wall clock time and date at job start Mon Mar 30 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00252 * 2 1 4 4 C 1.53004 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46481 * 65.00376 * 4 3 2 6 6 C 1.46502 * 120.00251 * 90.00109 * 5 4 3 7 7 C 1.50705 * 109.47066 * 95.69063 * 6 5 4 8 8 H 1.08001 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99645 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99504 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47220 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46802 * 120.00817 * 11 9 7 14 14 H 1.48496 * 109.46938 * 240.00302 * 11 9 7 15 15 C 1.34774 * 119.99728 * 269.99467 * 5 4 3 16 16 O 1.21582 * 119.99995 * 5.23758 * 15 5 4 17 17 C 1.47693 * 120.00087 * 185.24107 * 15 5 4 18 18 C 1.39486 * 122.10657 * 185.83166 * 17 15 5 19 19 C 1.34994 * 111.68596 * 179.78165 * 18 17 15 20 20 S 1.71764 * 105.45226 * 0.42596 * 19 18 17 21 21 N 1.30606 * 122.10090 * 6.11033 * 17 15 5 22 22 H 1.09000 * 109.46913 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.47199 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47007 * 300.00054 * 1 2 3 25 25 H 1.09007 * 109.46737 * 59.99661 * 3 2 1 26 26 H 1.09002 * 109.47362 * 300.00102 * 3 2 1 27 27 H 1.08991 * 109.47089 * 305.00016 * 4 3 2 28 28 H 1.08998 * 109.46655 * 184.99763 * 4 3 2 29 29 H 1.08998 * 109.47061 * 215.68890 * 6 5 4 30 30 H 1.08995 * 109.46941 * 335.69698 * 6 5 4 31 31 H 0.97002 * 119.99853 * 179.97438 * 10 9 7 32 32 H 1.08005 * 124.15366 * 359.97438 * 18 17 15 33 33 H 1.08004 * 127.27649 * 180.17198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.2882 1.3998 -2.4131 7 6 5.7712 1.6643 -2.4585 8 1 6.4170 1.2507 -1.6980 9 6 6.3035 2.4333 -3.4715 10 7 5.5172 2.9364 -4.3978 11 14 8.1418 2.7605 -3.5281 12 1 8.8002 2.0866 -2.3803 13 1 8.6998 2.2316 -4.7986 14 1 8.3868 4.2231 -3.4509 15 6 4.0958 -0.7760 -1.3332 16 8 3.7472 -1.4757 -0.4020 17 6 4.6500 -1.3945 -2.5546 18 6 4.6832 -2.7772 -2.7359 19 6 5.2276 -3.1114 -3.9250 20 16 5.6465 -1.6222 -4.6714 21 7 5.1447 -0.6814 -3.5305 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8508 0.5684 0.8426 28 1 3.9785 2.1764 0.0902 29 1 3.9831 0.8842 -3.3237 30 1 3.7528 2.3458 -2.3342 31 1 5.8917 3.4778 -5.1102 32 1 4.3154 -3.4922 -2.0148 33 1 5.3733 -4.1055 -4.3215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705422544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:06 Heat of formation + Delta-G solvation = -36.188409 kcal Electronic energy + Delta-G solvation = -19146.323310 eV Core-core repulsion = 16106.399676 eV Total energy + Delta-G solvation = -3039.923634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35262 -39.34267 -38.39935 -36.70668 -34.46716 -32.45342 -31.16003 -28.89550 -27.56739 -26.72875 -24.85446 -23.92533 -21.78884 -20.05449 -19.22425 -18.57397 -17.95146 -17.40793 -17.11581 -16.60333 -16.33264 -16.01049 -15.69858 -15.13944 -14.63551 -14.26534 -14.14219 -14.09281 -13.64063 -13.40268 -13.02671 -12.97302 -12.69957 -12.57989 -12.15519 -12.00158 -11.88890 -11.61419 -11.28522 -10.70182 -10.63858 -10.52315 -10.30070 -9.67401 -9.33885 -8.06457 -6.11058 -0.07138 0.79073 0.98743 1.16148 1.38254 1.41911 1.50855 2.32379 2.43036 2.52954 2.97702 3.26365 3.81502 4.08433 4.16102 4.24500 4.41225 4.53099 4.54724 4.58206 4.62306 4.77041 4.82691 4.91379 5.00668 5.01867 5.42326 5.56119 5.79510 5.96216 6.23794 6.35021 6.58074 6.92396 7.34584 7.52861 9.01139 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.008764 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.202258 B = 3193.985701 C = 4493.930235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.051 3.949 4 C 0.116 3.884 5 N -0.586 5.586 6 C 0.260 3.740 7 C -0.491 4.491 8 H 0.036 0.964 9 C 0.030 3.970 10 N -0.919 5.919 11 Si 0.936 3.064 12 H -0.279 1.279 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.582 3.418 16 O -0.565 6.565 17 C 0.010 3.990 18 C -0.152 4.152 19 C -0.268 4.268 20 S 0.433 5.567 21 N -0.464 5.464 22 H 0.039 0.961 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.171 0.829 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 -7.537 1.438 8.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.026 4.026 4 C -0.007 4.007 5 N -0.315 5.315 6 C 0.139 3.861 7 C -0.531 4.531 8 H 0.054 0.946 9 C -0.169 4.169 10 N -0.559 5.559 11 Si 0.762 3.238 12 H -0.204 1.204 13 H -0.202 1.202 14 H -0.205 1.205 15 C 0.366 3.634 16 O -0.445 6.445 17 C -0.163 4.163 18 C -0.185 4.185 19 C -0.416 4.416 20 S 0.587 5.413 21 N -0.298 5.298 22 H 0.057 0.943 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.189 0.811 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.757 -6.477 0.392 7.498 hybrid contribution 0.066 -0.337 1.231 1.278 sum -3.691 -6.814 1.623 7.917 Atomic orbital electron populations 1.22857 0.80382 1.03161 1.00503 1.88089 1.20694 1.27970 1.95437 1.22977 0.93520 0.85042 1.01078 1.21594 0.93210 0.99435 0.86478 1.48052 1.63376 1.05705 1.14415 1.19281 0.95156 0.88605 0.83076 1.21260 0.92983 1.29463 1.09368 0.94590 1.25312 1.00602 0.95889 0.95091 1.70010 1.35982 1.35542 1.14412 0.85856 0.82143 0.77895 0.77876 1.20368 1.20218 1.20458 1.17536 0.77864 0.82448 0.85518 1.90670 1.52013 1.62385 1.39481 1.21394 1.06324 0.92205 0.96373 1.21427 1.03772 0.93596 0.99706 1.27477 1.05898 1.08694 0.99564 1.80617 1.49667 0.88599 1.22382 1.73576 1.16319 1.32812 1.07067 0.94261 0.89394 0.92398 0.89711 0.93861 0.90613 0.87846 0.94003 0.96891 0.92908 0.81147 0.76172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.63 9.27 -136.41 -1.26 -15.90 16 3 C 0.05 1.68 6.28 71.98 0.45 2.14 16 4 C 0.12 4.40 5.82 86.38 0.50 4.90 16 5 N -0.59 -26.81 2.45 -829.73 -2.04 -28.85 16 6 C 0.26 13.22 4.75 85.63 0.41 13.63 16 7 C -0.49 -26.44 7.50 25.60 0.19 -26.25 16 8 H 0.04 2.03 7.81 -2.91 -0.02 2.00 16 9 C 0.03 1.62 5.46 84.66 0.46 2.08 16 10 N -0.92 -51.41 13.29 21.45 0.28 -51.12 16 11 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 15 C 0.58 27.17 7.30 86.74 0.63 27.80 16 16 O -0.57 -27.27 15.24 8.60 0.13 -27.14 16 17 C 0.01 0.44 6.42 42.13 0.27 0.71 16 18 C -0.15 -5.19 9.98 21.82 0.22 -4.98 16 19 C -0.27 -7.18 11.41 67.07 0.76 -6.41 16 20 S 0.43 14.34 23.20 -56.49 -1.31 13.03 16 21 N -0.46 -20.58 6.16 -75.29 -0.46 -21.04 16 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 2.93 7.50 -2.39 -0.02 2.91 16 28 H 0.10 3.64 8.07 -2.39 -0.02 3.62 16 29 H 0.04 2.30 5.85 -2.39 -0.01 2.29 16 30 H 0.01 0.69 8.03 -2.39 -0.02 0.67 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.17 5.36 8.00 -2.91 -0.02 5.33 16 33 H 0.22 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -68.16 298.73 3.63 -64.53 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.11 Total: 5.84 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 5.15 Total: 15.58 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -2.22 Total: -101.01 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.13 Total: -43.04 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 14.34 SS G_CDS: -1.31 Total: 13.03 kcal Total: -68.16 3.63 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705422544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.345 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds