Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99954 * 2 1 4 4 C 1.53002 * 109.47643 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46751 * 64.99839 * 4 3 2 6 6 C 1.46501 * 119.99974 * 262.76999 * 5 4 3 7 7 C 1.50699 * 109.47094 * 265.00511 * 6 5 4 8 8 H 1.07997 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00142 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99688 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47310 * 90.00539 * 11 9 7 13 13 H 1.48504 * 109.47384 * 210.00023 * 11 9 7 14 14 H 1.48499 * 109.47436 * 330.00129 * 11 9 7 15 15 C 1.34774 * 119.99761 * 82.77569 * 5 4 3 16 16 O 1.21634 * 119.99741 * 182.72787 * 15 5 4 17 17 C 1.47103 * 120.00429 * 2.71938 * 15 5 4 18 18 C 1.38382 * 127.99899 * 172.75552 * 17 15 5 19 19 C 1.37576 * 111.26319 * 179.82701 * 18 17 15 20 20 N 1.29557 * 117.94549 * 0.50500 * 19 18 17 21 21 S 1.56309 * 110.38240 * 359.71113 * 20 19 18 22 22 H 1.08999 * 109.46650 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47073 * 299.99628 * 1 2 3 24 24 H 1.08994 * 109.46975 * 59.99938 * 1 2 3 25 25 H 1.09004 * 109.47177 * 59.99750 * 3 2 1 26 26 H 1.09004 * 109.47431 * 300.00101 * 3 2 1 27 27 H 1.09001 * 109.46568 * 305.00227 * 4 3 2 28 28 H 1.08992 * 109.47499 * 185.00078 * 4 3 2 29 29 H 1.08999 * 109.47197 * 25.00404 * 6 5 4 30 30 H 1.09005 * 109.47003 * 145.00319 * 6 5 4 31 31 H 0.96996 * 119.99743 * 179.97438 * 10 9 7 32 32 H 1.08002 * 124.36664 * 359.97438 * 18 17 15 33 33 H 1.08000 * 121.02835 * 180.19258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2589 -0.8727 -1.2963 7 6 5.7329 -1.1021 -1.0823 8 1 6.3934 -0.2617 -0.9284 9 6 6.2384 -2.3849 -1.0841 10 7 7.5248 -2.5851 -0.8978 11 14 5.0960 -3.8385 -1.3510 12 1 5.0066 -4.1379 -2.8027 13 1 5.6279 -5.0246 -0.6330 14 1 3.7452 -3.5089 -0.8295 15 6 4.1230 1.3150 -2.3605 16 8 4.4412 0.7916 -3.4113 17 6 3.8977 2.7674 -2.3008 18 6 4.1311 3.7071 -3.2894 19 6 3.7935 4.9717 -2.8656 20 7 3.3374 5.1065 -1.6604 21 16 3.2722 3.7185 -0.9446 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8465 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9784 2.1766 0.0902 29 1 3.6950 -1.3787 -0.5126 30 1 3.9667 -1.2699 -2.2684 31 1 7.8803 -3.4876 -0.8987 32 1 4.5252 3.4771 -4.2683 33 1 3.9099 5.8263 -3.5155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705430345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = -19.050673 kcal Electronic energy + Delta-G solvation = -18881.051074 eV Core-core repulsion = 15841.870588 eV Total energy + Delta-G solvation = -3039.180486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58155 -38.85549 -37.61826 -35.13029 -32.76948 -31.41731 -29.98156 -28.02774 -26.26846 -25.63095 -23.15245 -22.78517 -20.78160 -19.10951 -18.04735 -16.98548 -16.66757 -16.53797 -15.76007 -15.42400 -15.15609 -14.78918 -14.39750 -14.12506 -13.63639 -13.47797 -13.11366 -12.56614 -12.36862 -12.19523 -11.96482 -11.63931 -11.24857 -11.12850 -10.96156 -10.52123 -10.36568 -10.11452 -9.67123 -9.58988 -9.52554 -9.34476 -8.67960 -8.56720 -7.86612 -6.07040 -4.06173 0.43795 1.33253 1.96795 2.33763 3.32021 3.37811 3.41833 3.48833 3.63612 3.79543 4.42431 4.63533 5.03453 5.05130 5.09654 5.21839 5.25857 5.28294 5.36006 5.38058 5.42370 5.67599 5.72728 5.88988 5.96629 6.55971 6.75865 6.96225 7.17663 7.19935 7.60714 8.05122 8.44917 8.73323 8.95726 9.52645 11.06200 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.007062 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.017301 B = 3964.070165 C = 4879.063488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.037 3.963 4 C 0.102 3.898 5 N -0.574 5.574 6 C 0.224 3.776 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.897 5.897 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.583 3.417 16 O -0.516 6.516 17 C -0.248 4.248 18 C -0.123 4.123 19 C 0.062 3.938 20 N -0.553 5.553 21 S 0.411 5.589 22 H 0.085 0.915 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.174 0.826 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 11.741 2.049 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.042 4.042 4 C -0.025 4.025 5 N -0.304 5.304 6 C 0.104 3.896 7 C -0.571 4.571 8 H 0.093 0.907 9 C -0.128 4.128 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.367 3.633 16 O -0.393 6.393 17 C -0.381 4.381 18 C -0.158 4.158 19 C -0.130 4.130 20 N -0.380 5.380 21 S 0.566 5.434 22 H 0.103 0.897 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.191 0.809 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.566 11.803 3.429 18.306 hybrid contribution 0.108 -0.610 -1.879 1.978 sum -13.458 11.193 1.551 17.573 Atomic orbital electron populations 1.22737 0.81540 1.02739 0.99577 1.88030 1.19159 1.26799 1.95247 1.23306 0.94618 0.85663 1.00592 1.21858 0.91716 0.98789 0.90162 1.47737 1.64190 1.11021 1.07471 1.19757 0.97236 0.74384 0.98249 1.21340 0.91390 0.94295 1.50027 0.90733 1.24817 0.94973 0.98647 0.94383 1.69894 1.12092 1.21765 1.49798 0.86880 0.81699 0.82415 0.78999 1.19948 1.21092 1.18584 1.16723 0.78757 0.83052 0.84725 1.90805 1.47096 1.72127 1.29254 1.27264 1.09849 1.00015 1.01004 1.22113 1.01221 0.90834 1.01638 1.22194 1.00244 0.98356 0.92254 1.72095 1.23385 1.29143 1.13425 1.82119 1.53202 0.90037 1.18039 0.89652 0.94222 0.94364 0.91674 0.93262 0.86924 0.90100 0.93705 0.94633 0.92552 0.80867 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.65 10.57 -35.23 -0.37 -6.02 16 3 C 0.04 0.48 4.95 37.16 0.18 0.66 16 4 C 0.10 1.59 5.32 -4.04 -0.02 1.56 16 5 N -0.57 -11.84 2.43 -176.45 -0.43 -12.27 16 6 C 0.22 5.47 4.17 -5.19 -0.02 5.44 16 7 C -0.53 -15.23 9.90 -34.44 -0.34 -15.57 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 11 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 15 C 0.58 12.19 7.55 -12.67 -0.10 12.10 16 16 O -0.52 -12.82 16.61 5.25 0.09 -12.73 16 17 C -0.25 -4.04 6.26 -35.93 -0.23 -4.26 16 18 C -0.12 -1.72 10.41 -39.77 -0.41 -2.13 16 19 C 0.06 0.76 11.15 -18.75 -0.21 0.55 16 20 N -0.55 -7.45 11.29 21.64 0.24 -7.20 16 21 S 0.41 5.29 16.57 -107.50 -1.78 3.50 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 6.47 -51.93 -0.34 0.30 16 27 H 0.11 1.75 8.02 -51.93 -0.42 1.34 16 28 H 0.08 1.11 4.47 -24.05 -0.11 1.00 16 29 H 0.05 1.06 7.01 -51.93 -0.36 0.70 16 30 H 0.04 0.93 6.97 -51.93 -0.36 0.57 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -34.98 293.84 -5.56 -40.54 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.71 Total: -2.14 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.13 Total: 1.87 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.59 Total: -46.33 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.29 Total: -18.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.78 Total: 3.50 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.98 -5.56 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705430345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.488 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds