Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99954 * 2 1 4 4 C 1.53002 * 109.47643 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46751 * 64.99839 * 4 3 2 6 6 C 1.46501 * 119.99974 * 262.76999 * 5 4 3 7 7 C 1.50699 * 109.47094 * 265.00511 * 6 5 4 8 8 H 1.07997 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00142 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99688 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47310 * 90.00539 * 11 9 7 13 13 H 1.48504 * 109.47384 * 210.00023 * 11 9 7 14 14 H 1.48499 * 109.47436 * 330.00129 * 11 9 7 15 15 C 1.34774 * 119.99761 * 82.77569 * 5 4 3 16 16 O 1.21634 * 119.99741 * 182.72787 * 15 5 4 17 17 C 1.47103 * 120.00429 * 2.71938 * 15 5 4 18 18 C 1.38382 * 127.99899 * 172.75552 * 17 15 5 19 19 C 1.37576 * 111.26319 * 179.82701 * 18 17 15 20 20 N 1.29557 * 117.94549 * 0.50500 * 19 18 17 21 21 S 1.56309 * 110.38240 * 359.71113 * 20 19 18 22 22 H 1.08999 * 109.46650 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47073 * 299.99628 * 1 2 3 24 24 H 1.08994 * 109.46975 * 59.99938 * 1 2 3 25 25 H 1.09004 * 109.47177 * 59.99750 * 3 2 1 26 26 H 1.09004 * 109.47431 * 300.00101 * 3 2 1 27 27 H 1.09001 * 109.46568 * 305.00227 * 4 3 2 28 28 H 1.08992 * 109.47499 * 185.00078 * 4 3 2 29 29 H 1.08999 * 109.47197 * 25.00404 * 6 5 4 30 30 H 1.09005 * 109.47003 * 145.00319 * 6 5 4 31 31 H 0.96996 * 119.99743 * 179.97438 * 10 9 7 32 32 H 1.08002 * 124.36664 * 359.97438 * 18 17 15 33 33 H 1.08000 * 121.02835 * 180.19258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2589 -0.8727 -1.2963 7 6 5.7329 -1.1021 -1.0823 8 1 6.3934 -0.2617 -0.9284 9 6 6.2384 -2.3849 -1.0841 10 7 7.5248 -2.5851 -0.8978 11 14 5.0960 -3.8385 -1.3510 12 1 5.0066 -4.1379 -2.8027 13 1 5.6279 -5.0246 -0.6330 14 1 3.7452 -3.5089 -0.8295 15 6 4.1230 1.3150 -2.3605 16 8 4.4412 0.7916 -3.4113 17 6 3.8977 2.7674 -2.3008 18 6 4.1311 3.7071 -3.2894 19 6 3.7935 4.9717 -2.8656 20 7 3.3374 5.1065 -1.6604 21 16 3.2722 3.7185 -0.9446 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8465 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9784 2.1766 0.0902 29 1 3.6950 -1.3787 -0.5126 30 1 3.9667 -1.2699 -2.2684 31 1 7.8803 -3.4876 -0.8987 32 1 4.5252 3.4771 -4.2683 33 1 3.9099 5.8263 -3.5155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705430345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -45.550315 kcal Electronic energy + Delta-G solvation = -18882.200185 eV Core-core repulsion = 15841.870588 eV Total energy + Delta-G solvation = -3040.329597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03535 -40.00292 -38.76256 -36.72107 -34.85597 -32.79497 -31.37498 -29.70056 -27.22182 -26.97600 -24.63975 -24.20068 -22.21689 -20.38677 -19.40222 -19.09288 -17.94030 -17.60608 -17.00442 -16.92461 -16.43238 -16.17128 -15.72812 -15.50523 -15.10316 -14.75718 -14.56936 -14.26330 -13.85337 -13.61166 -13.22700 -13.09137 -12.81498 -12.49790 -12.34165 -12.09303 -12.03124 -11.74213 -11.44919 -11.02663 -10.81436 -10.76300 -10.61920 -9.69840 -9.55714 -8.32869 -6.38053 -0.74535 0.20292 0.91683 1.26164 1.35271 1.38162 1.48470 1.97986 2.15074 2.32998 2.81580 3.01476 3.37698 3.95939 3.98132 4.05168 4.13161 4.20046 4.41437 4.54516 4.61067 4.70290 4.75506 4.88260 4.89727 4.91248 4.95012 5.42039 5.48488 5.53852 6.22124 6.23652 6.48310 6.62835 7.09456 7.27615 8.83962 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.007062 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.017301 B = 3964.070165 C = 4879.063488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.040 3.960 4 C 0.093 3.907 5 N -0.582 5.582 6 C 0.238 3.762 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.015 3.985 10 N -0.944 5.944 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.273 1.273 14 H -0.238 1.238 15 C 0.577 3.423 16 O -0.574 6.574 17 C -0.295 4.295 18 C -0.111 4.111 19 C 0.070 3.930 20 N -0.560 5.560 21 S 0.467 5.533 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.108 0.892 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.269 0.731 32 H 0.179 0.821 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 13.147 2.870 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.038 4.038 4 C -0.032 4.032 5 N -0.312 5.312 6 C 0.116 3.884 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.766 3.234 12 H -0.201 1.201 13 H -0.199 1.199 14 H -0.161 1.161 15 C 0.365 3.635 16 O -0.455 6.455 17 C -0.428 4.428 18 C -0.147 4.147 19 C -0.122 4.122 20 N -0.388 5.388 21 S 0.624 5.376 22 H 0.108 0.892 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.126 0.874 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.196 0.804 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.037 13.249 4.308 21.243 hybrid contribution 0.902 -0.882 -2.109 2.458 sum -15.135 12.367 2.198 19.668 Atomic orbital electron populations 1.22931 0.79504 1.03619 1.01046 1.87967 1.21495 1.27922 1.95576 1.23319 0.92216 0.85594 1.02638 1.22196 0.94141 0.99244 0.87651 1.47752 1.64184 1.09824 1.09419 1.19330 0.94362 0.77338 0.97349 1.21558 0.93212 0.93217 1.49733 0.95135 1.25781 0.96655 1.01987 0.93896 1.70039 1.14294 1.22807 1.51214 0.85771 0.80425 0.78367 0.78813 1.20120 1.19855 1.16091 1.17292 0.77418 0.84961 0.83852 1.90748 1.49735 1.73848 1.31149 1.26888 1.13540 0.97983 1.04382 1.22400 0.99707 0.91157 1.01480 1.22539 0.98918 0.98591 0.92145 1.72119 1.23472 1.29131 1.14083 1.81749 1.51551 0.88477 1.15848 0.89236 0.91686 0.93869 0.87440 0.93060 0.87266 0.88365 0.92377 0.96519 0.92213 0.80353 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.58 10.57 -148.98 -1.57 -13.16 16 3 C 0.04 0.95 4.95 71.98 0.36 1.31 16 4 C 0.09 2.81 5.32 86.38 0.46 3.27 16 5 N -0.58 -24.47 2.43 -830.41 -2.02 -26.49 16 6 C 0.24 11.88 4.17 85.63 0.36 12.24 16 7 C -0.54 -32.09 9.90 25.60 0.25 -31.84 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.02 0.90 5.47 84.66 0.46 1.36 16 10 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 11 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 15 C 0.58 24.84 7.55 86.57 0.65 25.49 16 16 O -0.57 -29.91 16.61 -4.14 -0.07 -29.98 16 17 C -0.29 -9.44 6.26 24.63 0.15 -9.29 16 18 C -0.11 -2.94 10.41 22.15 0.23 -2.71 16 19 C 0.07 1.47 11.15 84.87 0.95 2.42 16 20 N -0.56 -13.16 11.29 -85.45 -0.96 -14.13 16 21 S 0.47 10.82 16.57 -56.49 -0.94 9.88 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.19 6.47 -2.38 -0.02 1.18 16 27 H 0.11 3.35 8.02 -2.39 -0.02 3.33 16 28 H 0.10 2.55 4.47 -20.12 -0.09 2.46 16 29 H 0.06 2.73 7.01 -2.39 -0.02 2.72 16 30 H 0.02 0.90 6.97 -2.38 -0.02 0.88 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -79.72 293.84 2.73 -76.99 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.99 Total: 5.74 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.12 Total: 3.97 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -2.69 Total: -100.31 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.64 Total: -43.14 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Atomic # 16 Polarization: 10.82 SS G_CDS: -0.94 Total: 9.88 kcal Total: -79.72 2.73 -76.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705430345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.441 kcal (2) G-P(sol) polarization free energy of solvation -79.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds