Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 O 1.45192 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34236 * 117.00281 * 179.97438 * 9 8 7 11 11 O 1.20827 * 119.99639 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00520 * 179.97438 * 10 9 8 13 13 S 1.80996 * 109.47353 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00137 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99653 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46996 * 120.00257 * 18 16 14 21 21 H 1.48504 * 109.46999 * 240.00219 * 18 16 14 22 22 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 23 23 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 24 24 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 25 25 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 26 26 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 27 27 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 28 28 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 29 29 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 30 30 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 31 31 H 1.09004 * 109.47387 * 300.00720 * 12 10 9 32 32 H 1.09006 * 109.46726 * 60.00351 * 12 10 9 33 33 H 0.97000 * 119.99882 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 8 1.3162 -4.4320 1.4363 10 6 1.2296 -5.0444 2.6277 11 8 1.5157 -4.4453 3.6371 12 6 0.7742 -6.4788 2.7063 13 16 0.7617 -7.0140 4.4352 14 6 0.2085 -8.6751 4.2374 15 1 -0.0059 -9.0591 3.2509 16 6 0.0492 -9.4907 5.3492 17 7 0.3109 -9.0230 6.5514 18 14 -0.5366 -11.2520 5.1392 19 1 -0.7593 -11.5312 3.6978 20 1 0.4919 -12.1823 5.6701 21 1 -1.8078 -11.4428 5.8830 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5143 25 1 4.4053 1.3713 0.0112 26 1 4.4212 -1.2961 -0.0013 27 1 0.7995 -2.5863 -0.4346 28 1 2.4874 -3.1293 -0.5903 29 1 2.7594 -2.9894 1.8704 30 1 1.0715 -2.4464 2.0262 31 1 -0.2306 -6.5643 2.2925 32 1 1.4570 -7.1085 2.1356 33 1 0.1993 -9.5928 7.3284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759907069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -14.269531 kcal Electronic energy + Delta-G solvation = -17240.887831 eV Core-core repulsion = 14201.914670 eV Total energy + Delta-G solvation = -3038.973161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51188 -40.05357 -36.43364 -33.98021 -33.01777 -32.51218 -29.99829 -28.54007 -26.99844 -25.59595 -23.86128 -21.41304 -21.05396 -19.93360 -17.99445 -17.32457 -16.83170 -16.46475 -16.04810 -15.39444 -14.87296 -14.81599 -14.48564 -14.12746 -13.87076 -13.31088 -13.03892 -12.90161 -12.70687 -12.67626 -12.42948 -11.87421 -11.71555 -11.11797 -11.10603 -10.90513 -10.83742 -10.49325 -10.09193 -9.92428 -9.55095 -9.15014 -8.79053 -8.38778 -6.63683 -6.30151 -4.03082 1.52119 2.21533 2.50381 2.60319 2.68905 3.17800 3.21888 3.27428 3.46922 4.11823 4.27332 4.33239 4.55386 4.68957 4.85530 4.90194 5.05869 5.08973 5.10414 5.18484 5.28333 5.42746 5.49298 5.51352 5.68578 5.73534 5.91308 6.03671 6.39764 6.60320 6.71036 7.44123 7.53003 8.10228 8.27798 9.15508 10.77411 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.056035 B = 0.002861 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.566245 B = 9785.232874 C = 9860.113483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.370 5.370 3 N -0.297 5.297 4 C 0.046 3.954 5 C -0.265 4.265 6 C 0.086 3.914 7 C -0.056 4.056 8 C 0.073 3.927 9 O -0.361 6.361 10 C 0.480 3.520 11 O -0.486 6.486 12 C -0.128 4.128 13 S -0.059 6.059 14 C -0.536 4.536 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.185 0.815 26 H 0.150 0.850 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 14.326 -15.237 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.153 5.153 3 N -0.119 5.119 4 C -0.139 4.139 5 C -0.295 4.295 6 C -0.041 4.041 7 C -0.095 4.095 8 C -0.002 4.002 9 O -0.280 6.280 10 C 0.321 3.679 11 O -0.371 6.371 12 C -0.276 4.276 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.201 0.799 26 H 0.168 0.832 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.688 16.103 -13.808 21.279 hybrid contribution -0.106 -2.305 -1.109 2.560 sum 1.582 13.798 -14.917 20.381 Atomic orbital electron populations 1.21920 0.74274 1.04587 1.03812 1.48539 1.06649 1.03364 1.56766 1.77381 1.01943 1.07790 1.24743 1.23858 0.95239 0.95081 0.99746 1.21328 0.96298 0.95171 1.16671 1.20753 0.91449 0.89721 1.02220 1.20100 1.03841 0.88651 0.96914 1.22813 1.01150 0.79955 0.96281 1.86467 1.79349 1.27176 1.34983 1.23323 0.74441 0.89415 0.80725 1.90683 1.44316 1.66115 1.35997 1.23302 1.04951 0.90449 1.08912 1.85448 1.88170 1.13894 0.95788 1.22879 1.52430 0.96811 0.96251 0.90507 1.25016 0.94831 0.99339 0.94381 1.70021 1.45419 1.36691 0.98072 0.86061 0.78431 0.82202 0.78485 1.19492 1.20491 1.20503 0.90404 0.89122 0.89267 0.79857 0.83227 0.89489 0.87767 0.90483 0.91371 0.87880 0.87813 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.27 59.85 0.67 1.35 16 2 N -0.37 -3.92 4.01 -63.89 -0.26 -4.17 16 3 N -0.30 -3.56 12.58 30.63 0.39 -3.17 16 4 C 0.05 0.46 12.03 -17.36 -0.21 0.26 16 5 C -0.27 -2.63 10.72 -40.01 -0.43 -3.06 16 6 C 0.09 0.87 6.19 -82.27 -0.51 0.37 16 7 C -0.06 -0.50 5.88 -27.88 -0.16 -0.66 16 8 C 0.07 0.88 5.45 37.16 0.20 1.09 16 9 O -0.36 -5.34 10.22 -39.27 -0.40 -5.74 16 10 C 0.48 8.91 7.98 36.00 0.29 9.19 16 11 O -0.49 -10.51 15.61 -18.75 -0.29 -10.81 16 12 C -0.13 -2.53 6.27 36.00 0.23 -2.31 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 14 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 15 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 18 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.45 6.98 -51.92 -0.36 0.09 16 25 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 26 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.09 0.65 6.95 -51.93 -0.36 0.29 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 31 H 0.10 1.87 8.14 -51.91 -0.42 1.44 16 32 H 0.10 1.89 8.14 -51.91 -0.42 1.46 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -34.23 310.98 -6.17 -40.40 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.07 Total: -2.14 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.28 Total: -6.35 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.86 Total: -32.15 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.69 Total: -16.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.23 -6.17 -40.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759907069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.131 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds