Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 O 1.45192 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34236 * 117.00281 * 179.97438 * 9 8 7 11 11 O 1.20827 * 119.99639 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00520 * 179.97438 * 10 9 8 13 13 S 1.80996 * 109.47353 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00137 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99653 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46996 * 120.00257 * 18 16 14 21 21 H 1.48504 * 109.46999 * 240.00219 * 18 16 14 22 22 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 23 23 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 24 24 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 25 25 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 26 26 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 27 27 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 28 28 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 29 29 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 30 30 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 31 31 H 1.09004 * 109.47387 * 300.00720 * 12 10 9 32 32 H 1.09006 * 109.46726 * 60.00351 * 12 10 9 33 33 H 0.97000 * 119.99882 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 8 1.3162 -4.4320 1.4363 10 6 1.2296 -5.0444 2.6277 11 8 1.5157 -4.4453 3.6371 12 6 0.7742 -6.4788 2.7063 13 16 0.7617 -7.0140 4.4352 14 6 0.2085 -8.6751 4.2374 15 1 -0.0059 -9.0591 3.2509 16 6 0.0492 -9.4907 5.3492 17 7 0.3109 -9.0230 6.5514 18 14 -0.5366 -11.2520 5.1392 19 1 -0.7593 -11.5312 3.6978 20 1 0.4919 -12.1823 5.6701 21 1 -1.8078 -11.4428 5.8830 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5143 25 1 4.4053 1.3713 0.0112 26 1 4.4212 -1.2961 -0.0013 27 1 0.7995 -2.5863 -0.4346 28 1 2.4874 -3.1293 -0.5903 29 1 2.7594 -2.9894 1.8704 30 1 1.0715 -2.4464 2.0262 31 1 -0.2306 -6.5643 2.2925 32 1 1.4570 -7.1085 2.1356 33 1 0.1993 -9.5928 7.3284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759907069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -35.857339 kcal Electronic energy + Delta-G solvation = -17241.823948 eV Core-core repulsion = 14201.914670 eV Total energy + Delta-G solvation = -3039.909278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.26078 -41.44831 -37.78688 -34.79710 -34.60123 -33.76822 -31.45228 -29.50500 -27.70317 -27.62016 -24.82548 -22.44408 -22.13711 -20.69044 -19.88007 -18.73769 -17.88150 -17.51332 -17.28142 -16.88579 -16.37032 -15.98352 -15.74424 -15.25565 -14.69834 -14.61714 -14.41937 -13.98254 -13.65205 -13.59065 -13.25842 -13.18554 -12.93623 -12.89997 -12.73509 -12.62807 -11.76365 -11.74042 -11.62743 -11.55268 -11.16737 -10.36121 -10.31737 -9.53713 -8.72911 -8.36842 -6.16403 0.70361 1.06937 1.12101 1.42015 1.43203 1.55987 1.60149 1.79629 1.96568 2.24560 2.98593 3.25250 3.52596 3.67129 3.78057 3.80167 4.02519 4.19882 4.25020 4.30299 4.36630 4.45556 4.47299 4.61198 4.77013 4.81236 4.83525 5.19481 5.27359 5.42662 5.69894 6.03089 6.19379 6.67268 6.69382 7.05315 8.72617 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.056035 B = 0.002861 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.566245 B = 9785.232874 C = 9860.113483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.379 5.379 3 N -0.333 5.333 4 C 0.040 3.960 5 C -0.276 4.276 6 C 0.078 3.922 7 C -0.043 4.043 8 C 0.071 3.929 9 O -0.345 6.345 10 C 0.490 3.510 11 O -0.523 6.523 12 C -0.108 4.108 13 S -0.143 6.143 14 C -0.545 4.545 15 H 0.088 0.912 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.209 0.791 26 H 0.166 0.834 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 13.488 -17.346 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.162 5.162 3 N -0.155 5.155 4 C -0.145 4.145 5 C -0.306 4.306 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.003 4.003 9 O -0.262 6.262 10 C 0.332 3.668 11 O -0.411 6.411 12 C -0.256 4.256 13 S 0.084 5.916 14 C -0.693 4.693 15 H 0.106 0.894 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.822 3.178 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.097 0.903 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.226 0.774 26 H 0.183 0.817 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.330 15.284 -15.952 22.132 hybrid contribution 0.038 -1.906 -0.540 1.982 sum 1.369 13.377 -16.492 21.280 Atomic orbital electron populations 1.22187 0.72804 1.06112 1.04337 1.48838 1.07692 1.03121 1.56518 1.77327 1.02958 1.09085 1.26132 1.24368 0.95541 0.95755 0.98798 1.21672 0.96976 0.95445 1.16477 1.20975 0.91708 0.90094 1.02244 1.20050 1.05510 0.87901 0.94700 1.23044 1.00552 0.78127 0.98625 1.86432 1.78715 1.28578 1.32475 1.23008 0.73645 0.88967 0.81171 1.90683 1.46073 1.66834 1.37492 1.23094 1.06942 0.91584 1.03976 1.85586 1.88523 1.14868 1.02609 1.23226 1.52188 0.96959 0.96901 0.89429 1.26130 0.94735 1.04279 0.93899 1.70175 1.46805 1.38620 0.99121 0.84877 0.77820 0.75920 0.79168 1.17891 1.20010 1.19999 0.90349 0.88376 0.87076 0.77421 0.81687 0.87599 0.86090 0.91040 0.91960 0.85713 0.85711 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.27 127.77 1.44 2.53 16 2 N -0.38 -7.54 4.01 -356.04 -1.43 -8.97 16 3 N -0.33 -7.74 12.58 -57.02 -0.72 -8.46 16 4 C 0.04 0.76 12.03 85.23 1.02 1.78 16 5 C -0.28 -5.06 10.72 21.99 0.24 -4.82 16 6 C 0.08 1.44 6.19 41.41 0.26 1.70 16 7 C -0.04 -0.65 5.88 29.85 0.18 -0.47 16 8 C 0.07 1.60 5.45 71.98 0.39 1.99 16 9 O -0.35 -9.39 10.22 -51.47 -0.53 -9.92 16 10 C 0.49 17.58 7.98 71.23 0.57 18.15 16 11 O -0.52 -22.65 15.61 21.96 0.34 -22.31 16 12 C -0.11 -4.09 6.27 71.23 0.45 -3.64 16 13 S -0.14 -7.59 20.57 -56.49 -1.16 -8.75 16 14 C -0.55 -29.94 9.50 67.96 0.65 -29.30 16 15 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -54.40 13.22 21.65 0.29 -54.12 16 18 Si 1.00 42.27 29.55 68.60 2.03 44.30 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 0.86 6.98 -2.38 -0.02 0.84 16 25 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.11 1.22 6.95 -2.39 -0.02 1.20 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 30 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 32 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -74.56 310.98 5.58 -68.98 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.11 Total: 10.07 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.65 Total: -10.82 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.86 Total: -71.55 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.18 Total: -32.23 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.75 kcal Total: -74.56 5.58 -68.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759907069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.119 kcal (2) G-P(sol) polarization free energy of solvation -74.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds