Wall clock time and date at job start Mon Mar 30 2020 01:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 O 1.45199 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.34230 * 116.99614 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 10 9 8 13 13 S 1.81001 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.76203 * 100.00081 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31636 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99731 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46828 * 90.00190 * 18 16 14 20 20 H 1.48496 * 109.46967 * 210.00136 * 18 16 14 21 21 H 1.48499 * 109.47309 * 330.00467 * 18 16 14 22 22 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 23 23 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 24 24 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 25 25 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 26 26 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 28 28 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 31 31 H 1.09000 * 109.47303 * 300.00327 * 12 10 9 32 32 H 1.09003 * 109.46535 * 60.00663 * 12 10 9 33 33 H 0.96998 * 119.99512 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 8 1.1115 -4.3213 -1.4223 10 6 0.8180 -4.8708 -2.6113 11 8 0.9313 -4.2191 -3.6224 12 6 0.3484 -6.3009 -2.6851 13 16 0.0373 -6.7454 -4.4119 14 6 -0.4843 -8.4161 -4.2086 15 1 -0.5300 -8.8512 -3.2212 16 6 -0.8372 -9.1727 -5.3174 17 7 -0.7819 -8.6423 -6.5209 18 14 -1.3894 -10.9442 -5.1019 19 1 -2.8621 -10.9844 -4.9155 20 1 -1.0216 -11.7276 -6.3086 21 1 -0.7235 -11.5289 -3.9102 22 1 -0.3633 0.0031 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5112 25 1 4.4097 1.3412 -0.0122 26 1 4.4776 -1.2831 -0.0089 27 1 0.9328 -2.5761 0.6021 28 1 2.6188 -3.1229 0.4394 29 1 2.4683 -2.8547 -2.0212 30 1 0.7822 -2.3078 -1.8583 31 1 1.1155 -6.9570 -2.2739 32 1 -0.5709 -6.4114 -2.1098 33 1 -1.0282 -9.1713 -7.2957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771905982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:43 Heat of formation + Delta-G solvation = -48.771056 kcal Electronic energy + Delta-G solvation = -17332.292309 eV Core-core repulsion = 14291.823050 eV Total energy + Delta-G solvation = -3040.469259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.12543 -41.55811 -37.91789 -35.56242 -34.61221 -32.67971 -31.78972 -30.10386 -27.80814 -27.69175 -24.83082 -22.55647 -22.38173 -20.74964 -19.91640 -18.85278 -17.94681 -17.82668 -17.48023 -16.89533 -16.35817 -15.98379 -15.92182 -15.14154 -14.72501 -14.65362 -14.43318 -14.00411 -13.90730 -13.65778 -13.25753 -13.19914 -13.07624 -13.00115 -12.89452 -12.65992 -11.81282 -11.79625 -11.72784 -11.16059 -11.01692 -10.75092 -10.38090 -9.34261 -8.74609 -8.37865 -6.17810 0.75035 1.05516 1.08164 1.38569 1.43699 1.52830 1.61415 2.09925 2.12731 2.23730 2.97687 3.24326 3.49064 3.53189 3.56934 3.76430 3.95415 4.07229 4.14152 4.19825 4.42696 4.44359 4.52314 4.59560 4.67788 4.82300 5.02009 5.13984 5.27997 5.41331 5.78959 6.16036 6.17974 6.59130 7.04294 7.08711 8.71285 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.056317 B = 0.002901 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.063959 B = 9648.632118 C = 9668.193543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.194 3.806 3 N -0.532 5.532 4 C -0.053 4.053 5 C -0.052 4.052 6 N -0.456 5.456 7 C 0.116 3.884 8 C 0.051 3.949 9 O -0.340 6.340 10 C 0.491 3.509 11 O -0.520 6.520 12 C -0.107 4.107 13 S -0.143 6.143 14 C -0.546 4.546 15 H 0.088 0.912 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.257 1.257 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.185 0.815 26 H 0.205 0.795 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 10.636 17.230 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 N -0.252 5.252 4 C -0.199 4.199 5 C -0.184 4.184 6 N -0.141 5.141 7 C -0.007 4.007 8 C -0.025 4.025 9 O -0.256 6.256 10 C 0.334 3.666 11 O -0.408 6.408 12 C -0.255 4.255 13 S 0.084 5.916 14 C -0.694 4.694 15 H 0.107 0.893 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.180 1.180 22 H 0.117 0.883 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.202 0.798 26 H 0.222 0.778 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.943 12.127 15.825 20.541 hybrid contribution 0.109 -2.098 0.500 2.159 sum 5.052 10.029 16.325 19.814 Atomic orbital electron populations 1.20357 0.83178 1.04656 1.04868 1.23920 0.96971 0.81349 1.04579 1.70237 1.03580 1.29657 1.21712 1.22730 0.94776 0.94015 1.08418 1.23273 0.87677 0.96967 1.10492 1.45382 1.06847 1.07067 1.54823 1.21677 1.05398 0.78928 0.94686 1.23362 1.00719 0.79410 0.98984 1.86393 1.77387 1.28971 1.32865 1.23052 0.73333 0.89248 0.81003 1.90699 1.49339 1.63542 1.37234 1.23097 1.06707 0.91595 1.04115 1.85610 1.87392 1.15919 1.02640 1.23193 1.52187 0.97028 0.96971 0.89344 1.26124 0.94680 1.04294 0.93893 1.70168 1.46219 1.39144 0.99188 0.84932 0.78743 0.75869 0.78333 1.19303 1.20470 1.18046 0.88258 0.89204 0.89823 0.79757 0.77774 0.85555 0.85201 0.91340 0.91145 0.85600 0.85491 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.04 71.24 0.72 -0.33 16 2 C 0.19 4.06 7.90 138.13 1.09 5.15 16 3 N -0.53 -13.53 11.25 -188.13 -2.12 -15.65 16 4 C -0.05 -1.10 11.87 83.52 0.99 -0.11 16 5 C -0.05 -0.89 11.58 83.09 0.96 0.08 16 6 N -0.46 -7.99 2.75 -514.30 -1.41 -9.41 16 7 C 0.12 1.52 6.06 86.38 0.52 2.04 16 8 C 0.05 1.04 5.79 71.98 0.42 1.46 16 9 O -0.34 -8.52 10.22 -51.42 -0.53 -9.05 16 10 C 0.49 16.87 7.98 71.24 0.57 17.43 16 11 O -0.52 -21.90 15.61 21.97 0.34 -21.56 16 12 C -0.11 -3.91 6.27 71.24 0.45 -3.46 16 13 S -0.14 -7.44 20.58 -56.49 -1.16 -8.61 16 14 C -0.55 -29.59 9.50 67.95 0.65 -28.95 16 15 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 16 C 0.02 0.83 5.49 84.86 0.47 1.29 16 17 N -0.91 -54.01 13.22 21.65 0.29 -53.73 16 18 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.08 1.04 7.34 -2.39 -0.02 1.03 16 25 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.13 1.20 7.94 -2.39 -0.02 1.18 16 28 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.07 1.58 7.63 -2.39 -0.02 1.56 16 31 H 0.13 4.10 8.14 -2.40 -0.02 4.08 16 32 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -74.58 310.94 5.37 -69.20 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.11 Total: 10.36 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 6.83 Total: -5.40 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.25 Total: -78.79 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.18 Total: -30.61 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.16 Total: -8.61 kcal Total: -74.58 5.37 -69.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771905982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.432 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds