Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46863 * 2 1 4 4 O 1.42900 * 109.47373 * 239.99902 * 2 1 3 5 5 C 1.50697 * 109.47192 * 119.99169 * 2 1 3 6 6 N 1.29431 * 124.79893 * 75.03039 * 5 2 1 7 7 C 1.30945 * 117.36668 * 180.02562 * 6 5 2 8 8 C 1.35669 * 114.18628 * 0.02562 * 7 6 5 9 9 C 1.46677 * 126.12816 * 179.97438 * 8 7 6 10 10 O 1.21688 * 120.00069 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99949 * 0.02702 * 9 8 7 12 12 C 1.46511 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46647 * 324.99507 * 12 11 9 14 14 C 1.52990 * 109.47082 * 84.99493 * 12 11 9 15 15 C 1.50700 * 109.46848 * 204.99590 * 12 11 9 16 16 H 1.07997 * 120.00257 * 265.62241 * 15 12 11 17 17 C 1.37881 * 119.99578 * 85.62118 * 15 12 11 18 18 N 1.31513 * 120.00344 * 352.96091 * 17 15 12 19 19 Si 1.86808 * 119.99565 * 172.96003 * 17 15 12 20 20 H 1.48500 * 109.46928 * 269.99854 * 19 17 15 21 21 H 1.48497 * 109.47183 * 29.99832 * 19 17 15 22 22 H 1.48494 * 109.47099 * 149.99988 * 19 17 15 23 23 S 1.70951 * 124.81163 * 255.34289 * 5 2 1 24 24 H 1.08997 * 109.47745 * 300.00408 * 1 2 3 25 25 H 1.09000 * 109.47293 * 60.00388 * 1 2 3 26 26 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 27 27 H 0.96695 * 113.99855 * 60.00355 * 4 2 1 28 28 H 1.07996 * 122.90997 * 179.97438 * 7 6 5 29 29 H 0.96997 * 120.00499 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.47341 * 55.95295 * 14 12 11 31 31 H 1.09006 * 109.46820 * 175.94749 * 14 12 11 32 32 H 1.08998 * 109.47431 * 295.94965 * 14 12 11 33 33 H 0.96997 * 119.99966 * 354.57542 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0323 -0.7102 1.2305 6 7 2.0197 -1.9934 1.3997 7 6 2.4933 -2.4562 2.5293 8 6 2.9391 -1.4976 3.3796 9 6 3.5177 -1.7216 4.7087 10 8 3.8825 -0.7751 5.3808 11 7 3.6452 -2.9757 5.1855 12 6 4.2226 -3.1994 6.5133 13 1 5.0026 -2.4611 6.6993 14 6 3.1288 -3.0641 7.5744 15 6 4.8155 -4.5834 6.5766 16 1 4.2309 -5.4041 6.9654 17 6 6.1043 -4.8020 6.1380 18 7 6.7673 -3.8375 5.5382 19 14 6.9086 -6.4682 6.3959 20 1 7.6158 -6.4796 7.7016 21 1 5.8675 -7.5271 6.3874 22 1 7.8820 -6.7223 5.3036 23 16 2.6925 0.0651 2.6037 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7211 -0.2701 -1.9979 28 1 2.5255 -3.5098 2.7643 29 1 3.3541 -3.7302 4.6499 30 1 2.3151 -3.7529 7.3474 31 1 3.5424 -3.3010 8.5548 32 1 2.7497 -2.0422 7.5773 33 1 6.3245 -2.9990 5.3337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773951942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -55.399415 kcal Electronic energy + Delta-G solvation = -18102.658876 eV Core-core repulsion = 15061.902190 eV Total energy + Delta-G solvation = -3040.756686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93735 -38.63758 -37.30108 -34.99865 -32.45673 -31.88214 -30.32306 -28.63788 -26.14610 -24.76700 -23.11601 -22.05830 -20.59737 -19.10136 -18.28627 -17.71769 -16.88355 -16.49143 -15.30648 -14.81275 -14.78113 -14.53541 -14.00740 -13.86903 -13.62224 -13.31174 -13.00830 -12.90734 -12.43759 -11.91586 -11.65182 -11.44772 -11.26606 -11.07573 -10.85762 -10.49859 -10.25714 -10.14210 -9.91489 -9.31992 -9.26546 -8.87562 -8.77829 -8.69034 -7.93812 -6.59586 -4.42334 0.38458 1.20482 1.75470 2.66439 3.34447 3.35955 3.53230 3.78128 3.87147 4.13378 4.18412 4.37866 4.56182 4.74314 5.00092 5.17441 5.31364 5.38277 5.42981 5.63837 5.82957 6.12831 6.30577 6.48197 6.54502 6.97910 7.16524 7.32099 7.52203 7.73262 7.79545 8.21448 8.49557 8.66644 9.00318 9.38513 10.76867 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.004575 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.685932 B = 6118.234619 C = 6585.613453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.186 3.814 3 H 0.076 0.924 4 O -0.547 6.547 5 C 0.019 3.981 6 N -0.449 5.449 7 C 0.074 3.926 8 C -0.262 4.262 9 C 0.569 3.431 10 O -0.558 6.558 11 N -0.686 5.686 12 C 0.235 3.765 13 H 0.056 0.944 14 C -0.140 4.140 15 C -0.608 4.608 16 H 0.059 0.941 17 C 0.031 3.969 18 N -0.885 5.885 19 Si 1.073 2.927 20 H -0.284 1.284 21 H -0.286 1.286 22 H -0.284 1.284 23 S 0.221 5.779 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.381 0.619 28 H 0.183 0.817 29 H 0.387 0.613 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 7.083 -10.680 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.123 3.877 3 H 0.094 0.906 4 O -0.353 6.353 5 C -0.257 4.257 6 N -0.163 5.163 7 C -0.083 4.083 8 C -0.387 4.387 9 C 0.353 3.647 10 O -0.439 6.439 11 N -0.335 5.335 12 C 0.136 3.864 13 H 0.074 0.926 14 C -0.199 4.199 15 C -0.647 4.647 16 H 0.077 0.923 17 C -0.179 4.179 18 N -0.518 5.518 19 Si 0.900 3.100 20 H -0.210 1.210 21 H -0.212 1.212 22 H -0.209 1.209 23 S 0.478 5.522 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.229 0.771 28 H 0.200 0.800 29 H 0.222 0.778 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.722 7.289 -10.078 15.787 hybrid contribution -1.803 -0.183 -0.337 1.843 sum -11.525 7.106 -10.415 17.082 Atomic orbital electron populations 1.22486 0.94281 1.04092 1.02928 1.20022 0.93273 0.92775 0.81596 0.90620 1.86671 1.76520 1.57067 1.15027 1.27016 1.04140 0.93490 1.01009 1.65996 1.17151 1.12115 1.21061 1.22241 0.97049 1.01263 0.87723 1.26456 1.12382 0.96435 1.03448 1.17121 0.79249 0.85376 0.82997 1.90762 1.51731 1.41891 1.59558 1.47769 1.60050 1.04875 1.20792 1.19034 0.91643 0.97796 0.77889 0.92645 1.21998 0.99171 0.98911 0.99829 1.22171 1.01505 0.94126 1.46874 0.92255 1.26077 0.94671 1.04511 0.92604 1.70707 1.40056 1.05977 1.35018 0.83499 0.75771 0.73822 0.76935 1.21033 1.21154 1.20937 1.83845 1.52741 1.08074 1.07520 0.91195 0.91220 0.90712 0.77114 0.80048 0.77835 0.94105 0.92581 0.94849 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.52 37.16 0.35 -1.08 16 2 C 0.19 1.90 4.08 -27.89 -0.11 1.79 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 O -0.55 -5.95 13.29 -35.23 -0.47 -6.41 16 5 C 0.02 0.27 6.28 -13.29 -0.08 0.19 16 6 N -0.45 -7.41 10.49 -11.50 -0.12 -7.53 16 7 C 0.07 1.26 10.93 -18.85 -0.21 1.05 16 8 C -0.26 -4.84 6.48 -37.10 -0.24 -5.08 16 9 C 0.57 12.59 7.75 -12.85 -0.10 12.49 16 10 O -0.56 -14.02 16.63 5.20 0.09 -13.94 16 11 N -0.69 -15.27 4.99 -56.24 -0.28 -15.55 16 12 C 0.24 5.84 2.04 -69.08 -0.14 5.70 16 13 H 0.06 1.58 6.59 -51.93 -0.34 1.24 16 14 C -0.14 -3.06 9.46 37.15 0.35 -2.70 16 15 C -0.61 -15.92 8.49 -34.44 -0.29 -16.21 16 16 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 17 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 18 N -0.88 -25.93 13.56 55.43 0.75 -25.18 16 19 Si 1.07 23.77 29.91 -169.99 -5.08 18.68 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 S 0.22 3.32 23.01 -107.50 -2.47 0.85 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.38 1.97 9.08 45.56 0.41 2.38 16 28 H 0.18 2.74 7.15 -52.49 -0.38 2.36 16 29 H 0.39 7.86 7.30 -40.82 -0.30 7.56 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.28 8.37 6.93 -40.82 -0.28 8.09 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -33.53 305.54 -6.60 -40.13 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.05 Total: 7.46 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.57 Total: -3.12 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.35 Total: -48.25 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.38 Total: -20.35 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.08 Total: 18.68 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.47 Total: 0.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.53 -6.60 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.268 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds