Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47324 * 2 1 4 4 O 1.42895 * 109.47092 * 120.00376 * 2 1 3 5 5 C 1.50702 * 109.46981 * 240.00173 * 2 1 3 6 6 N 1.29434 * 124.80127 * 285.02376 * 5 2 1 7 7 C 1.30942 * 117.36033 * 179.97438 * 6 5 2 8 8 C 1.35659 * 114.19387 * 0.02562 * 7 6 5 9 9 C 1.46681 * 126.13303 * 180.02562 * 8 7 6 10 10 O 1.21684 * 120.00446 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99693 * 359.97438 * 9 8 7 12 12 C 1.46506 * 120.00046 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46923 * 325.00866 * 12 11 9 14 14 C 1.52999 * 109.47033 * 85.00226 * 12 11 9 15 15 C 1.50691 * 109.47338 * 205.00324 * 12 11 9 16 16 H 1.08002 * 119.99991 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00057 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99645 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99844 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47497 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46948 * 120.00348 * 19 17 15 22 22 H 1.48506 * 109.47089 * 240.00040 * 19 17 15 23 23 S 1.70945 * 124.80702 * 105.02212 * 5 2 1 24 24 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46636 * 299.99833 * 1 2 3 26 26 H 1.08995 * 109.47165 * 59.99684 * 1 2 3 27 27 H 0.96705 * 114.00156 * 299.99088 * 4 2 1 28 28 H 1.08004 * 122.90389 * 179.97438 * 7 6 5 29 29 H 0.97000 * 120.00096 * 0.02562 * 11 9 8 30 30 H 1.08994 * 109.47389 * 179.97438 * 14 12 11 31 31 H 1.08999 * 109.47232 * 300.00477 * 14 12 11 32 32 H 1.09002 * 109.47281 * 59.99989 * 14 12 11 33 33 H 0.97006 * 119.99684 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 7 2.0188 -1.9935 -1.4000 7 6 2.4925 -2.4564 -2.5296 8 6 2.9404 -1.4980 -3.3789 9 6 3.5196 -1.7221 -4.7077 10 8 3.8864 -0.7758 -5.3791 11 7 3.6456 -2.9761 -5.1852 12 6 4.2246 -3.2000 -6.5122 13 1 3.9328 -2.3876 -7.1777 14 6 5.7499 -3.2459 -6.4019 15 6 3.7214 -4.5082 -7.0657 16 1 3.0382 -5.1123 -6.4871 17 6 4.1323 -4.9334 -8.3112 18 7 4.9638 -4.1976 -9.0160 19 14 3.5080 -6.5547 -8.9976 20 1 2.5901 -7.1870 -8.0164 21 1 2.7796 -6.3068 -10.2676 22 1 4.6576 -7.4590 -9.2547 23 16 2.7005 0.0643 -2.6000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7211 -0.2701 1.9979 28 1 2.5247 -3.5101 -2.7644 29 1 3.3528 -3.7305 -4.6502 30 1 6.1807 -3.4129 -7.3891 31 1 6.1139 -2.2997 -6.0016 32 1 6.0418 -4.0583 -5.7364 33 1 5.2527 -4.4966 -9.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773951943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = -46.624740 kcal Electronic energy + Delta-G solvation = -17870.543528 eV Core-core repulsion = 14830.167341 eV Total energy + Delta-G solvation = -3040.376188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02687 -38.70432 -37.35873 -34.87997 -32.63779 -31.98196 -30.17923 -28.33955 -26.19841 -25.29243 -23.18932 -22.07375 -20.43344 -19.21505 -18.27964 -17.72563 -16.82554 -16.06719 -15.37174 -15.20588 -14.84271 -14.55581 -14.37730 -13.95136 -13.58574 -13.17427 -12.92409 -12.49659 -12.44405 -11.77525 -11.69651 -11.52444 -11.12374 -11.00816 -10.81551 -10.54707 -10.36530 -10.27993 -9.92537 -9.39978 -9.24539 -9.09897 -8.94779 -8.60614 -8.02903 -6.16424 -4.26027 0.29427 1.11736 1.66921 2.57631 3.22372 3.30287 3.33112 3.68861 3.78741 4.03225 4.12558 4.35196 4.51171 4.69716 4.93521 5.16285 5.17638 5.33857 5.38816 5.48637 5.79943 6.03964 6.77397 6.90769 7.08276 7.26024 7.32519 7.46900 7.63389 7.65027 7.84573 8.08735 8.51216 8.69376 8.94622 9.41283 10.89706 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.003920 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.571887 B = 7140.901927 C = 7527.515611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.186 3.814 3 H 0.077 0.923 4 O -0.548 6.548 5 C 0.020 3.980 6 N -0.450 5.450 7 C 0.076 3.924 8 C -0.266 4.266 9 C 0.576 3.424 10 O -0.547 6.547 11 N -0.690 5.690 12 C 0.265 3.735 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.229 5.771 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.382 0.618 28 H 0.184 0.816 29 H 0.390 0.610 30 H 0.093 0.907 31 H 0.016 0.984 32 H 0.028 0.972 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 8.014 17.270 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.123 3.877 3 H 0.094 0.906 4 O -0.354 6.354 5 C -0.255 4.255 6 N -0.164 5.164 7 C -0.082 4.082 8 C -0.391 4.391 9 C 0.359 3.641 10 O -0.428 6.428 11 N -0.338 5.338 12 C 0.163 3.837 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.487 5.513 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.230 0.770 28 H 0.200 0.800 29 H 0.223 0.777 30 H 0.111 0.889 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.581 9.042 16.292 19.761 hybrid contribution -0.642 -1.926 0.009 2.030 sum -7.223 7.116 16.301 19.197 Atomic orbital electron populations 1.22491 0.94196 1.04155 1.03013 1.20031 0.93358 0.92763 0.81547 0.90568 1.86657 1.76530 1.57118 1.15065 1.27047 1.03922 0.93494 1.01057 1.66009 1.17155 1.12134 1.21106 1.22254 0.96895 1.01286 0.87720 1.26277 1.12838 0.96706 1.03253 1.16771 0.79364 0.84830 0.83175 1.90805 1.51284 1.41655 1.59008 1.46404 1.60879 1.05418 1.21075 1.18867 0.90171 0.97573 0.77046 0.93001 1.22093 0.98470 0.97008 1.03099 1.21230 1.28663 1.04859 1.02621 0.91863 1.24886 0.94719 0.97562 0.96483 1.69910 1.32297 1.37571 1.12212 0.86363 0.78664 0.82922 0.78984 1.19672 1.20837 1.20815 1.83888 1.52349 1.07691 1.07414 0.90676 0.91181 0.91125 0.77041 0.79956 0.77660 0.88899 0.96530 0.95279 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.52 37.16 0.35 -0.97 16 2 C 0.19 1.71 4.08 -27.88 -0.11 1.60 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 O -0.55 -5.34 13.29 -35.23 -0.47 -5.81 16 5 C 0.02 0.26 6.28 -13.29 -0.08 0.18 16 6 N -0.45 -6.79 10.49 -11.50 -0.12 -6.91 16 7 C 0.08 1.15 10.93 -18.85 -0.21 0.95 16 8 C -0.27 -4.49 6.48 -37.10 -0.24 -4.73 16 9 C 0.58 12.02 7.75 -12.85 -0.10 11.92 16 10 O -0.55 -13.34 16.63 5.20 0.09 -13.25 16 11 N -0.69 -14.60 5.05 -56.24 -0.28 -14.88 16 12 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 13 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 15 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 19 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 S 0.23 3.15 23.01 -107.50 -2.47 0.68 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.38 1.61 9.08 45.56 0.41 2.02 16 28 H 0.18 2.37 7.15 -52.48 -0.38 2.00 16 29 H 0.39 7.09 7.25 -40.82 -0.30 6.79 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -33.10 303.56 -6.74 -39.84 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.04 Total: 4.84 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.62 Total: -0.54 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.22 Total: -45.83 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.38 Total: -19.06 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.47 Total: 0.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.10 -6.74 -39.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.782 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds