Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47324 * 2 1 4 4 O 1.42895 * 109.47092 * 120.00376 * 2 1 3 5 5 C 1.50702 * 109.46981 * 240.00173 * 2 1 3 6 6 N 1.29434 * 124.80127 * 285.02376 * 5 2 1 7 7 C 1.30942 * 117.36033 * 179.97438 * 6 5 2 8 8 C 1.35659 * 114.19387 * 0.02562 * 7 6 5 9 9 C 1.46681 * 126.13303 * 180.02562 * 8 7 6 10 10 O 1.21684 * 120.00446 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99693 * 359.97438 * 9 8 7 12 12 C 1.46506 * 120.00046 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46923 * 325.00866 * 12 11 9 14 14 C 1.52999 * 109.47033 * 85.00226 * 12 11 9 15 15 C 1.50691 * 109.47338 * 205.00324 * 12 11 9 16 16 H 1.08002 * 119.99991 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00057 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99645 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99844 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47497 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46948 * 120.00348 * 19 17 15 22 22 H 1.48506 * 109.47089 * 240.00040 * 19 17 15 23 23 S 1.70945 * 124.80702 * 105.02212 * 5 2 1 24 24 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46636 * 299.99833 * 1 2 3 26 26 H 1.08995 * 109.47165 * 59.99684 * 1 2 3 27 27 H 0.96705 * 114.00156 * 299.99088 * 4 2 1 28 28 H 1.08004 * 122.90389 * 179.97438 * 7 6 5 29 29 H 0.97000 * 120.00096 * 0.02562 * 11 9 8 30 30 H 1.08994 * 109.47389 * 179.97438 * 14 12 11 31 31 H 1.08999 * 109.47232 * 300.00477 * 14 12 11 32 32 H 1.09002 * 109.47281 * 59.99989 * 14 12 11 33 33 H 0.97006 * 119.99684 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 7 2.0188 -1.9935 -1.4000 7 6 2.4925 -2.4564 -2.5296 8 6 2.9404 -1.4980 -3.3789 9 6 3.5196 -1.7221 -4.7077 10 8 3.8864 -0.7758 -5.3791 11 7 3.6456 -2.9761 -5.1852 12 6 4.2246 -3.2000 -6.5122 13 1 3.9328 -2.3876 -7.1777 14 6 5.7499 -3.2459 -6.4019 15 6 3.7214 -4.5082 -7.0657 16 1 3.0382 -5.1123 -6.4871 17 6 4.1323 -4.9334 -8.3112 18 7 4.9638 -4.1976 -9.0160 19 14 3.5080 -6.5547 -8.9976 20 1 2.5901 -7.1870 -8.0164 21 1 2.7796 -6.3068 -10.2676 22 1 4.6576 -7.4590 -9.2547 23 16 2.7005 0.0643 -2.6000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7211 -0.2701 1.9979 28 1 2.5247 -3.5101 -2.7644 29 1 3.3528 -3.7305 -4.6502 30 1 6.1807 -3.4129 -7.3891 31 1 6.1139 -2.2997 -6.0016 32 1 6.0418 -4.0583 -5.7364 33 1 5.2527 -4.4966 -9.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773951943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = -73.300942 kcal Electronic energy + Delta-G solvation = -17871.700295 eV Core-core repulsion = 14830.167341 eV Total energy + Delta-G solvation = -3041.532955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27561 -40.23935 -38.14361 -36.79743 -34.46960 -33.02244 -31.55907 -29.88511 -27.39382 -27.20589 -24.26116 -23.55954 -22.03824 -20.75983 -19.42454 -18.98216 -17.92901 -17.67555 -17.11839 -16.44253 -16.13588 -15.94942 -15.61937 -15.23827 -14.92741 -14.64921 -14.45846 -13.75021 -13.64855 -13.07626 -13.01042 -12.91829 -12.80944 -12.65327 -12.33991 -12.30728 -12.14068 -11.43109 -11.17912 -11.13187 -10.69750 -10.60994 -10.57819 -10.11104 -9.82975 -8.19838 -6.37458 -0.88584 -0.00482 0.53568 1.36150 1.44761 1.45912 1.57962 2.14762 2.31467 2.53582 2.90394 3.11254 3.42692 3.78614 3.83917 4.04244 4.13339 4.18067 4.70051 4.74871 4.83552 4.88631 4.96866 5.04154 5.25935 5.36091 5.52465 5.62706 5.82758 6.04675 6.49092 6.67618 6.76441 6.89983 7.22338 7.38563 8.86999 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.003920 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.571887 B = 7140.901927 C = 7527.515611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.180 3.820 3 H 0.109 0.891 4 O -0.571 6.571 5 C 0.038 3.962 6 N -0.476 5.476 7 C 0.098 3.902 8 C -0.312 4.312 9 C 0.579 3.421 10 O -0.592 6.592 11 N -0.688 5.688 12 C 0.271 3.729 13 H 0.005 0.995 14 C -0.135 4.135 15 C -0.548 4.548 16 H 0.075 0.925 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.974 3.026 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.278 1.278 23 S 0.255 5.745 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.406 0.594 28 H 0.199 0.801 29 H 0.406 0.594 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.042 0.958 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 7.652 19.496 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.118 3.882 3 H 0.126 0.874 4 O -0.381 6.381 5 C -0.236 4.236 6 N -0.191 5.191 7 C -0.061 4.061 8 C -0.436 4.436 9 C 0.365 3.635 10 O -0.475 6.475 11 N -0.336 5.336 12 C 0.168 3.832 13 H 0.023 0.977 14 C -0.194 4.194 15 C -0.586 4.586 16 H 0.093 0.907 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.799 3.201 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.204 1.204 23 S 0.514 5.486 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.258 0.742 28 H 0.216 0.784 29 H 0.242 0.758 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.957 8.689 18.574 21.996 hybrid contribution -0.268 -1.708 -0.533 1.810 sum -8.225 6.981 18.041 21.021 Atomic orbital electron populations 1.22478 0.92586 1.03398 1.04892 1.20362 0.94427 0.93382 0.80047 0.87385 1.86586 1.77010 1.58139 1.16327 1.27961 1.00750 0.93144 1.01792 1.66153 1.18697 1.13175 1.21042 1.22539 0.94574 1.01846 0.87094 1.25791 1.16422 0.99219 1.02191 1.17147 0.78285 0.83849 0.84223 1.90769 1.53244 1.42806 1.60717 1.46098 1.61039 1.06527 1.19927 1.18475 0.90515 0.95843 0.78352 0.97729 1.21920 0.98223 0.97234 1.02028 1.21544 1.28887 1.05074 1.03130 0.90682 1.25791 0.94774 1.01055 0.96796 1.70052 1.33408 1.39398 1.12588 0.85263 0.78205 0.78519 0.78141 1.18379 1.20918 1.20365 1.83746 1.51832 1.05944 1.07093 0.92700 0.87835 0.90803 0.74216 0.78402 0.75838 0.91068 0.96839 0.93927 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.52 71.98 0.69 -1.31 16 2 C 0.18 2.72 4.08 29.85 0.12 2.84 16 3 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 4 O -0.57 -9.31 13.29 -148.98 -1.98 -11.29 16 5 C 0.04 0.92 6.28 88.46 0.56 1.47 16 6 N -0.48 -13.53 10.49 -190.30 -2.00 -15.53 16 7 C 0.10 2.87 10.93 84.23 0.92 3.79 16 8 C -0.31 -10.44 6.48 23.88 0.15 -10.28 16 9 C 0.58 24.74 7.75 86.45 0.67 25.41 16 10 O -0.59 -30.01 16.63 -4.30 -0.07 -30.09 16 11 N -0.69 -29.54 5.05 -450.07 -2.27 -31.81 16 12 C 0.27 14.20 2.56 44.24 0.11 14.31 16 13 H 0.00 0.29 7.58 -2.39 -0.02 0.28 16 14 C -0.14 -6.92 9.26 71.98 0.67 -6.25 16 15 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 16 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 17 C 0.02 0.86 5.30 84.66 0.45 1.31 16 18 N -0.92 -52.31 11.32 21.45 0.24 -52.07 16 19 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 S 0.26 6.70 23.01 -56.49 -1.30 5.41 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.41 1.96 9.08 -74.05 -0.67 1.28 16 28 H 0.20 4.87 7.15 -2.91 -0.02 4.85 16 29 H 0.41 14.62 7.25 -92.71 -0.67 13.94 16 30 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -73.03 303.56 -0.98 -74.01 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.19 Total: 14.97 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.56 Total: 2.54 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.03 Total: -99.40 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.05 Total: -41.38 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -1.30 Total: 5.41 kcal Total: -73.03 -0.98 -74.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.704 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds