Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47339 * 2 1 4 4 O 1.42896 * 109.47588 * 120.00403 * 2 1 3 5 5 C 1.50701 * 109.46792 * 240.00633 * 2 1 3 6 6 N 1.29433 * 124.80665 * 284.95488 * 5 2 1 7 7 C 1.30941 * 117.36639 * 179.76872 * 6 5 2 8 8 C 1.35665 * 114.19141 * 0.48487 * 7 6 5 9 9 C 1.46681 * 126.13273 * 179.82961 * 8 7 6 10 10 O 1.21683 * 120.00279 * 179.68788 * 9 8 7 11 11 N 1.34777 * 119.99964 * 359.68168 * 9 8 7 12 12 C 1.46497 * 120.00376 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46725 * 35.00314 * 12 11 9 14 14 C 1.52997 * 109.47188 * 275.00479 * 12 11 9 15 15 C 1.50697 * 109.47081 * 155.00043 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46882 * 119.99668 * 19 17 15 22 22 H 1.48501 * 109.47152 * 239.99726 * 19 17 15 23 23 S 1.70953 * 124.80448 * 104.99977 * 5 2 1 24 24 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46521 * 299.99654 * 1 2 3 26 26 H 1.08994 * 109.47136 * 59.99466 * 1 2 3 27 27 H 0.96705 * 113.99713 * 60.00077 * 4 2 1 28 28 H 1.08003 * 122.90479 * 180.30732 * 7 6 5 29 29 H 0.97006 * 119.99702 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 31 31 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 32 32 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 33 33 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 7 2.0199 -1.9935 -1.3997 7 6 2.4896 -2.4560 -2.5311 8 6 2.9417 -1.4978 -3.3786 9 6 3.5216 -1.7218 -4.7071 10 8 3.8875 -0.7754 -5.3787 11 7 3.6493 -2.9759 -5.1839 12 6 4.2290 -3.1998 -6.5106 13 1 5.0098 -2.4619 -6.6950 14 6 3.1373 -3.0637 -7.5738 15 6 4.8213 -4.5841 -6.5729 16 1 4.7705 -5.2325 -5.7107 17 6 5.4279 -5.0228 -7.7307 18 7 5.4893 -4.2335 -8.7808 19 14 6.1614 -6.7391 -7.8082 20 1 5.9614 -7.4223 -6.5050 21 1 5.4910 -7.5158 -8.8818 22 1 7.6144 -6.6437 -8.0998 23 16 2.7000 0.0646 -2.6003 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7211 -1.5953 1.2327 28 1 2.5176 -3.5093 -2.7680 29 1 3.3574 -3.7304 -4.6486 30 1 2.3565 -3.8016 -7.3893 31 1 3.5688 -3.2298 -8.5609 32 1 2.7089 -2.0624 -7.5286 33 1 5.9164 -4.5420 -9.5952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773951944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -51.029504 kcal Electronic energy + Delta-G solvation = -17896.117757 eV Core-core repulsion = 14855.550564 eV Total energy + Delta-G solvation = -3040.567193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13608 -38.77025 -37.30585 -34.90783 -32.63343 -31.90016 -30.24747 -28.38146 -26.20218 -25.31557 -23.31558 -22.09423 -20.47038 -19.22384 -18.76482 -17.40007 -16.67796 -15.81888 -15.53675 -15.21345 -15.01482 -14.56204 -14.39314 -13.98288 -13.89762 -13.15176 -12.80174 -12.50504 -12.36173 -11.80029 -11.72076 -11.52922 -11.14429 -11.02843 -10.91862 -10.83872 -10.38256 -10.30202 -9.93437 -9.45824 -9.30631 -9.12275 -8.99123 -8.62700 -8.05818 -6.18292 -4.28106 0.25381 1.12069 1.64681 2.48772 3.20915 3.28891 3.31520 3.65359 3.71726 3.98801 4.15897 4.33126 4.54136 4.67788 4.91183 5.12305 5.14555 5.32853 5.44505 5.49298 5.72889 5.98429 6.74533 6.87583 7.05538 7.24100 7.29709 7.44039 7.50249 7.61261 7.82057 8.06420 8.48270 8.67022 8.91824 9.39321 10.87817 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038209 B = 0.003937 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.627359 B = 7109.819143 C = 7533.499867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.188 3.812 3 H 0.118 0.882 4 O -0.547 6.547 5 C -0.016 4.016 6 N -0.469 5.469 7 C 0.078 3.922 8 C -0.267 4.267 9 C 0.575 3.425 10 O -0.547 6.547 11 N -0.690 5.690 12 C 0.265 3.735 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.232 5.768 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.387 0.613 28 H 0.183 0.817 29 H 0.390 0.610 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.015 0.985 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 6.216 15.229 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.125 3.875 3 H 0.136 0.864 4 O -0.353 6.353 5 C -0.291 4.291 6 N -0.184 5.184 7 C -0.079 4.079 8 C -0.392 4.392 9 C 0.358 3.642 10 O -0.427 6.427 11 N -0.338 5.338 12 C 0.163 3.837 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.490 5.510 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.236 0.764 28 H 0.200 0.800 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.034 0.966 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.838 8.213 14.808 19.101 hybrid contribution 0.042 -2.899 -0.342 2.920 sum -8.796 5.314 14.466 17.745 Atomic orbital electron populations 1.22490 0.94066 1.03830 1.03382 1.20425 0.93606 0.94726 0.78706 0.86436 1.86552 1.77373 1.30195 1.41182 1.28382 1.03912 0.94055 1.02742 1.65910 1.18433 1.12062 1.21990 1.22162 0.96906 1.01187 0.87677 1.26259 1.12783 0.96878 1.03263 1.16782 0.79467 0.84857 0.83123 1.90809 1.51023 1.41608 1.59254 1.46403 1.60885 1.05353 1.21127 1.18868 0.91853 0.97325 0.75626 0.93005 1.22092 0.98195 0.96726 1.03623 1.21224 1.38218 0.98825 0.99150 0.91875 1.24885 0.95564 0.97918 0.95268 1.69904 1.43039 1.36004 1.03024 0.86364 0.78880 0.83535 0.78159 1.19676 1.20813 1.20808 1.83962 1.52002 1.07703 1.07371 0.91243 0.90554 0.91104 0.76433 0.79971 0.77703 0.95292 0.88889 0.96552 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.52 37.16 0.35 -0.91 16 2 C 0.19 1.69 4.09 -27.88 -0.11 1.57 16 3 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.55 -5.43 13.32 -35.23 -0.47 -5.90 16 5 C -0.02 -0.19 6.28 -13.29 -0.08 -0.27 16 6 N -0.47 -6.15 10.33 -11.50 -0.12 -6.27 16 7 C 0.08 1.09 10.93 -18.85 -0.21 0.89 16 8 C -0.27 -4.34 6.48 -37.10 -0.24 -4.58 16 9 C 0.57 11.79 7.75 -12.85 -0.10 11.69 16 10 O -0.55 -13.20 16.63 5.20 0.09 -13.12 16 11 N -0.69 -14.33 5.05 -56.25 -0.28 -14.62 16 12 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 13 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 14 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 15 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 19 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 S 0.23 3.08 23.01 -107.50 -2.47 0.61 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.39 3.08 8.89 45.56 0.41 3.48 16 28 H 0.18 2.18 7.15 -52.48 -0.38 1.80 16 29 H 0.39 6.90 7.25 -40.82 -0.30 6.60 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -31.29 303.26 -6.75 -38.04 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.05 Total: 6.23 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.62 Total: -1.01 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.22 Total: -44.78 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.38 Total: -19.01 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.47 Total: 0.61 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.29 -6.75 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.992 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds