Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47339 * 2 1 4 4 O 1.42896 * 109.47588 * 120.00403 * 2 1 3 5 5 C 1.50701 * 109.46792 * 240.00633 * 2 1 3 6 6 N 1.29433 * 124.80665 * 284.95488 * 5 2 1 7 7 C 1.30941 * 117.36639 * 179.76872 * 6 5 2 8 8 C 1.35665 * 114.19141 * 0.48487 * 7 6 5 9 9 C 1.46681 * 126.13273 * 179.82961 * 8 7 6 10 10 O 1.21683 * 120.00279 * 179.68788 * 9 8 7 11 11 N 1.34777 * 119.99964 * 359.68168 * 9 8 7 12 12 C 1.46497 * 120.00376 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46725 * 35.00314 * 12 11 9 14 14 C 1.52997 * 109.47188 * 275.00479 * 12 11 9 15 15 C 1.50697 * 109.47081 * 155.00043 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46882 * 119.99668 * 19 17 15 22 22 H 1.48501 * 109.47152 * 239.99726 * 19 17 15 23 23 S 1.70953 * 124.80448 * 104.99977 * 5 2 1 24 24 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46521 * 299.99654 * 1 2 3 26 26 H 1.08994 * 109.47136 * 59.99466 * 1 2 3 27 27 H 0.96705 * 113.99713 * 60.00077 * 4 2 1 28 28 H 1.08003 * 122.90479 * 180.30732 * 7 6 5 29 29 H 0.97006 * 119.99702 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 31 31 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 32 32 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 33 33 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 7 2.0199 -1.9935 -1.3997 7 6 2.4896 -2.4560 -2.5311 8 6 2.9417 -1.4978 -3.3786 9 6 3.5216 -1.7218 -4.7071 10 8 3.8875 -0.7754 -5.3787 11 7 3.6493 -2.9759 -5.1839 12 6 4.2290 -3.1998 -6.5106 13 1 5.0098 -2.4619 -6.6950 14 6 3.1373 -3.0637 -7.5738 15 6 4.8213 -4.5841 -6.5729 16 1 4.7705 -5.2325 -5.7107 17 6 5.4279 -5.0228 -7.7307 18 7 5.4893 -4.2335 -8.7808 19 14 6.1614 -6.7391 -7.8082 20 1 5.9614 -7.4223 -6.5050 21 1 5.4910 -7.5158 -8.8818 22 1 7.6144 -6.6437 -8.0998 23 16 2.7000 0.0646 -2.6003 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.7211 -1.5953 1.2327 28 1 2.5176 -3.5093 -2.7680 29 1 3.3574 -3.7304 -4.6486 30 1 2.3565 -3.8016 -7.3893 31 1 3.5688 -3.2298 -8.5609 32 1 2.7089 -2.0624 -7.5286 33 1 5.9164 -4.5420 -9.5952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773951944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -75.769689 kcal Electronic energy + Delta-G solvation = -17897.190572 eV Core-core repulsion = 14855.550564 eV Total energy + Delta-G solvation = -3041.640007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30834 -40.28492 -38.14293 -36.80064 -34.46599 -32.91215 -31.58282 -29.91104 -27.39238 -27.17849 -24.33140 -23.56800 -22.03837 -20.72717 -19.86301 -18.79643 -18.01899 -17.32563 -16.95471 -16.37428 -16.29291 -16.04653 -15.56155 -15.20643 -15.09886 -14.74481 -14.46283 -13.78181 -13.47624 -13.05889 -12.96586 -12.91696 -12.81180 -12.65042 -12.33549 -12.30831 -12.14235 -11.75611 -11.26980 -11.13005 -10.68019 -10.63431 -10.58630 -10.11717 -9.83133 -8.20089 -6.37837 -0.87546 0.02919 0.57093 1.33772 1.44574 1.45824 1.57713 2.14505 2.31417 2.53529 2.82195 3.11060 3.47213 3.69928 3.80270 4.03026 4.14796 4.20952 4.70045 4.75110 4.87043 4.88367 4.98173 5.03887 5.24085 5.36084 5.52220 5.62420 5.82685 6.04515 6.40368 6.62209 6.67457 6.76471 7.22687 7.38621 8.86695 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038209 B = 0.003937 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.627359 B = 7109.819143 C = 7533.499867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.185 3.815 3 H 0.137 0.863 4 O -0.556 6.556 5 C 0.011 3.989 6 N -0.479 5.479 7 C 0.103 3.897 8 C -0.313 4.313 9 C 0.578 3.422 10 O -0.594 6.594 11 N -0.687 5.687 12 C 0.271 3.729 13 H 0.003 0.997 14 C -0.135 4.135 15 C -0.548 4.548 16 H 0.076 0.924 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.974 3.026 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.284 1.284 23 S 0.243 5.757 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.394 0.606 28 H 0.202 0.798 29 H 0.406 0.594 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.012 0.988 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 5.334 17.551 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.122 3.878 3 H 0.155 0.845 4 O -0.364 6.364 5 C -0.264 4.264 6 N -0.194 5.194 7 C -0.056 4.056 8 C -0.438 4.438 9 C 0.364 3.636 10 O -0.477 6.477 11 N -0.335 5.335 12 C 0.168 3.832 13 H 0.021 0.979 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.094 0.906 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.210 1.210 23 S 0.502 5.498 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.245 0.755 28 H 0.218 0.782 29 H 0.242 0.758 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.926 7.323 17.170 21.142 hybrid contribution 0.318 -2.536 -0.929 2.719 sum -9.607 4.787 16.241 19.468 Atomic orbital electron populations 1.22466 0.92196 1.03963 1.04594 1.20788 0.94927 0.95044 0.77050 0.84549 1.86553 1.77711 1.30986 1.41100 1.29135 1.00811 0.93784 1.02699 1.66050 1.19388 1.12527 1.21481 1.22493 0.94304 1.01740 0.87024 1.25747 1.16548 0.99271 1.02210 1.17192 0.78336 0.83840 0.84278 1.90772 1.53066 1.42841 1.61042 1.46081 1.60974 1.06478 1.20014 1.18468 0.91015 0.95859 0.77879 0.97901 1.21914 0.98182 0.96893 1.02353 1.21544 1.38271 0.99115 0.99669 0.90623 1.25792 0.95893 1.01873 0.94876 1.70048 1.43807 1.37979 1.03642 0.85268 0.77593 0.78660 0.78637 1.18307 1.20360 1.21009 1.83919 1.51930 1.06424 1.07559 0.91659 0.88722 0.90562 0.75524 0.78167 0.75791 0.93814 0.91148 0.96860 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.52 71.98 0.69 -1.19 16 2 C 0.18 2.73 4.09 29.85 0.12 2.85 16 3 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 4 O -0.56 -9.38 13.32 -148.98 -1.99 -11.36 16 5 C 0.01 0.23 6.28 88.46 0.56 0.78 16 6 N -0.48 -11.39 10.33 -190.29 -1.97 -13.35 16 7 C 0.10 2.71 10.93 84.23 0.92 3.63 16 8 C -0.31 -10.01 6.48 23.88 0.15 -9.86 16 9 C 0.58 24.17 7.75 86.45 0.67 24.84 16 10 O -0.59 -29.90 16.63 -4.30 -0.07 -29.97 16 11 N -0.69 -28.84 5.05 -450.09 -2.27 -31.11 16 12 C 0.27 14.02 2.56 44.24 0.11 14.14 16 13 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 14 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 15 C -0.55 -28.65 8.73 25.60 0.22 -28.42 16 16 H 0.08 3.68 7.74 -2.91 -0.02 3.65 16 17 C 0.02 0.85 5.30 84.66 0.45 1.30 16 18 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 19 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 S 0.24 6.17 23.01 -56.49 -1.30 4.87 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.39 5.17 8.89 -74.05 -0.66 4.51 16 28 H 0.20 4.32 7.15 -2.91 -0.02 4.30 16 29 H 0.41 14.08 7.25 -92.70 -0.67 13.41 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 32 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -68.60 303.26 -0.94 -69.54 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.17 Total: 17.75 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.56 Total: 1.93 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.00 Total: -96.28 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.06 Total: -41.33 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.30 Total: 4.87 kcal Total: -68.60 -0.94 -69.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.229 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds