Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48504 * 109.47401 * 270.00069 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00162 * 3 2 1 6 6 H 1.48501 * 109.46810 * 149.99941 * 3 2 1 7 7 C 1.37874 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99804 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00079 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99516 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00118 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99788 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00039 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47039 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.46727 * 60.00247 * 15 14 13 17 17 O 1.42891 * 109.47159 * 300.00017 * 15 14 13 18 18 C 1.50706 * 109.47028 * 180.02562 * 15 14 13 19 19 C 1.38422 * 122.53644 * 265.00515 * 18 15 14 20 20 C 1.33390 * 114.91870 * 180.02562 * 19 18 15 21 21 S 1.75890 * 109.59395 * 359.97438 * 20 19 18 22 22 C 1.33383 * 122.53751 * 85.02331 * 18 15 14 23 23 H 0.97009 * 119.99965 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46853 * 60.00048 * 9 7 2 25 25 H 1.08995 * 109.46946 * 299.99691 * 9 7 2 26 26 H 0.96992 * 120.00363 * 0.02562 * 10 9 7 27 27 H 0.97006 * 119.99887 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.47159 * 60.00425 * 14 13 11 29 29 H 1.08997 * 109.47190 * 299.99933 * 14 13 11 30 30 H 0.96694 * 114.00641 * 300.00054 * 17 15 14 31 31 H 1.08000 * 122.54685 * 0.04229 * 19 18 15 32 32 H 1.07998 * 125.20728 * 180.02562 * 20 19 18 33 33 H 1.07996 * 125.20606 * 359.94742 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1149 -1.8976 -0.0025 13 7 5.7740 -4.0923 -0.0024 14 6 7.2143 -4.3601 -0.0029 15 6 7.4521 -5.8716 -0.0026 16 1 7.0006 -6.3105 -0.8924 17 8 6.8611 -6.4465 1.1644 18 6 8.9337 -6.1470 -0.0025 19 6 9.6472 -6.3831 -1.1650 20 6 10.9498 -6.6101 -0.9887 21 16 11.3359 -6.5291 0.7254 22 6 9.6568 -6.1820 1.1178 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8744 -0.6801 -0.8911 26 1 3.3694 -3.3126 -0.0010 27 1 5.1436 -4.8296 -0.0024 28 1 7.6657 -3.9216 0.8871 29 1 7.6652 -3.9211 -0.8929 30 1 7.2156 -6.1018 1.9954 31 1 9.1844 -6.3833 -2.1408 32 1 11.6590 -6.8119 -1.7777 33 1 9.2706 -6.0211 2.1134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = -47.480269 kcal Electronic energy + Delta-G solvation = -17608.599046 eV Core-core repulsion = 14568.185759 eV Total energy + Delta-G solvation = -3040.413286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83025 -38.89916 -36.51507 -34.42598 -33.87055 -32.29919 -30.44620 -28.88522 -27.41638 -24.64919 -22.45131 -21.81800 -20.36020 -19.27684 -18.42816 -18.21041 -17.05533 -16.36737 -15.93685 -15.44615 -14.97341 -14.57068 -14.32754 -14.04578 -13.62995 -13.26367 -13.17566 -13.04727 -12.81825 -12.55361 -12.31505 -11.94819 -11.70897 -11.13657 -10.96937 -10.73916 -10.50012 -9.94435 -9.59970 -9.43140 -9.16855 -8.87138 -8.74507 -8.72633 -7.98679 -6.18410 -4.20132 0.64420 1.30350 1.62454 2.27632 3.25355 3.30383 3.37498 3.45456 3.81801 4.12003 4.36508 4.44458 4.61150 4.71257 4.87175 4.99499 5.09493 5.17175 5.23481 5.54894 5.68909 5.76864 5.98016 6.10122 6.73220 6.77491 7.14326 7.26518 7.27315 7.43645 7.60526 8.31199 8.72098 8.84525 9.23112 9.43290 10.93603 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.003065 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.953134 B = 9134.184963 C = 9404.800885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.606 6.606 13 N -0.751 5.751 14 C 0.117 3.883 15 C 0.158 3.842 16 H 0.116 0.884 17 O -0.549 6.549 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.211 4.211 21 S 0.102 5.898 22 C -0.202 4.202 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.393 0.607 27 H 0.398 0.602 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.376 0.624 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.917 -16.029 0.287 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.394 3.606 12 O -0.486 6.486 13 N -0.409 5.409 14 C -0.009 4.009 15 C 0.095 3.905 16 H 0.134 0.866 17 O -0.355 6.355 18 C -0.143 4.143 19 C -0.155 4.155 20 C -0.347 4.347 21 S 0.366 5.634 22 C -0.337 4.337 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.226 0.774 27 H 0.232 0.768 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.224 0.776 31 H 0.162 0.838 32 H 0.183 0.817 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 22.474 -15.512 0.697 27.317 hybrid contribution -1.116 0.703 -0.494 1.408 sum 21.358 -14.809 0.203 25.991 Atomic orbital electron populations 1.69886 1.06210 1.27383 1.49634 1.24784 0.94788 0.99163 0.93926 0.86808 0.80598 0.83188 0.79044 1.19865 1.20950 1.18445 1.21105 0.88581 0.95204 1.53086 0.90273 1.19356 0.94809 0.77670 0.96608 1.45386 1.03701 1.11053 1.77280 1.16109 0.83586 0.82621 0.78272 1.90861 1.55436 1.43280 1.58992 1.44963 1.06992 1.06805 1.82119 1.21703 0.81908 0.94118 1.03129 1.20759 0.87347 0.92253 0.90097 0.86639 1.86620 1.65576 1.67525 1.15767 1.19464 0.97612 1.04385 0.92889 1.20047 0.93391 1.02677 0.99389 1.25630 0.99896 1.09943 0.99200 1.84320 1.08179 1.69503 1.01377 1.25370 0.96505 1.09356 1.02513 0.92296 0.95944 0.96386 0.77382 0.76803 0.91593 0.90831 0.77595 0.83822 0.81672 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -15.08 9.83 -34.44 -0.34 -15.41 16 8 H 0.08 2.29 7.84 -52.48 -0.41 1.87 16 9 C 0.24 6.01 4.50 -5.19 -0.02 5.99 16 10 N -0.72 -15.13 5.55 -66.41 -0.37 -15.50 16 11 C 0.69 13.87 8.57 -86.92 -0.74 13.13 16 12 O -0.61 -14.54 16.34 5.29 0.09 -14.45 16 13 N -0.75 -10.78 5.45 -65.23 -0.36 -11.13 16 14 C 0.12 1.41 5.32 -4.04 -0.02 1.39 16 15 C 0.16 1.44 3.39 -27.88 -0.09 1.34 16 16 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 17 O -0.55 -5.15 12.90 -35.23 -0.45 -5.60 16 18 C -0.13 -1.14 4.91 -106.25 -0.52 -1.66 16 19 C -0.12 -1.02 9.96 -41.21 -0.41 -1.43 16 20 C -0.21 -1.57 11.23 29.04 0.33 -1.24 16 21 S 0.10 0.77 23.34 -107.50 -2.51 -1.74 16 22 C -0.20 -1.62 10.43 29.04 0.30 -1.32 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 25 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 26 H 0.39 7.25 8.33 -40.82 -0.34 6.91 16 27 H 0.40 4.82 8.36 -40.82 -0.34 4.48 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.38 2.55 7.78 45.56 0.35 2.91 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.16 1.01 7.14 -52.49 -0.37 0.63 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -34.25 302.43 -7.72 -41.97 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.16 Total: 7.97 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.62 Total: 2.89 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.05 Total: -52.62 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.37 Total: -20.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.25 -7.72 -41.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.512 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds