Wall clock time and date at job start Mon Mar 30 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48504 * 109.47401 * 270.00069 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00162 * 3 2 1 6 6 H 1.48501 * 109.46810 * 149.99941 * 3 2 1 7 7 C 1.37874 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99804 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00079 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99516 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00118 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99788 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00039 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47039 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.46727 * 60.00247 * 15 14 13 17 17 O 1.42891 * 109.47159 * 300.00017 * 15 14 13 18 18 C 1.50706 * 109.47028 * 180.02562 * 15 14 13 19 19 C 1.38422 * 122.53644 * 265.00515 * 18 15 14 20 20 C 1.33390 * 114.91870 * 180.02562 * 19 18 15 21 21 S 1.75890 * 109.59395 * 359.97438 * 20 19 18 22 22 C 1.33383 * 122.53751 * 85.02331 * 18 15 14 23 23 H 0.97009 * 119.99965 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46853 * 60.00048 * 9 7 2 25 25 H 1.08995 * 109.46946 * 299.99691 * 9 7 2 26 26 H 0.96992 * 120.00363 * 0.02562 * 10 9 7 27 27 H 0.97006 * 119.99887 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.47159 * 60.00425 * 14 13 11 29 29 H 1.08997 * 109.47190 * 299.99933 * 14 13 11 30 30 H 0.96694 * 114.00641 * 300.00054 * 17 15 14 31 31 H 1.08000 * 122.54685 * 0.04229 * 19 18 15 32 32 H 1.07998 * 125.20728 * 180.02562 * 20 19 18 33 33 H 1.07996 * 125.20606 * 359.94742 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1149 -1.8976 -0.0025 13 7 5.7740 -4.0923 -0.0024 14 6 7.2143 -4.3601 -0.0029 15 6 7.4521 -5.8716 -0.0026 16 1 7.0006 -6.3105 -0.8924 17 8 6.8611 -6.4465 1.1644 18 6 8.9337 -6.1470 -0.0025 19 6 9.6472 -6.3831 -1.1650 20 6 10.9498 -6.6101 -0.9887 21 16 11.3359 -6.5291 0.7254 22 6 9.6568 -6.1820 1.1178 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8744 -0.6801 -0.8911 26 1 3.3694 -3.3126 -0.0010 27 1 5.1436 -4.8296 -0.0024 28 1 7.6657 -3.9216 0.8871 29 1 7.6652 -3.9211 -0.8929 30 1 7.2156 -6.1018 1.9954 31 1 9.1844 -6.3833 -2.1408 32 1 11.6590 -6.8119 -1.7777 33 1 9.2706 -6.0211 2.1134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:53 Heat of formation + Delta-G solvation = -75.349673 kcal Electronic energy + Delta-G solvation = -17609.807554 eV Core-core repulsion = 14568.185759 eV Total energy + Delta-G solvation = -3041.621794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05350 -39.95743 -37.26777 -36.18851 -35.25958 -34.35490 -31.29294 -30.13410 -28.87139 -25.60364 -23.97712 -22.92611 -21.93857 -20.20096 -19.64629 -19.02534 -18.38381 -17.83302 -17.22653 -16.70998 -16.27560 -16.02583 -15.63078 -15.19213 -14.93895 -14.49385 -14.41799 -14.29819 -13.86349 -13.75309 -13.41049 -13.12056 -13.01654 -12.67981 -12.41011 -11.91381 -11.77464 -11.64517 -11.40512 -11.15295 -10.90438 -10.33068 -9.75571 -9.65143 -9.34605 -8.38440 -6.45278 0.05575 0.73140 1.04608 1.34903 1.36571 1.50160 1.60424 1.94977 2.21174 2.30300 2.97173 3.39719 3.49305 3.75432 3.95652 4.06489 4.16343 4.46252 4.62170 4.66351 4.78340 4.84124 5.06820 5.10891 5.26485 5.39402 5.47544 5.49216 5.56802 5.98551 6.29423 6.56994 6.66120 7.15484 7.27439 7.67025 8.76356 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.003065 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.953134 B = 9134.184963 C = 9404.800885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.728 5.728 14 C 0.117 3.883 15 C 0.174 3.826 16 H 0.125 0.875 17 O -0.558 6.558 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.214 4.214 21 S 0.106 5.894 22 C -0.210 4.210 23 H 0.272 0.728 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.405 0.595 27 H 0.412 0.588 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.387 0.613 31 H 0.156 0.844 32 H 0.185 0.815 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.296 -16.624 0.204 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.394 3.606 12 O -0.529 6.529 13 N -0.385 5.385 14 C -0.008 4.008 15 C 0.112 3.888 16 H 0.143 0.857 17 O -0.365 6.365 18 C -0.156 4.156 19 C -0.170 4.170 20 C -0.350 4.350 21 S 0.370 5.630 22 C -0.346 4.346 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.240 0.760 27 H 0.249 0.751 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.237 0.763 31 H 0.174 0.826 32 H 0.203 0.797 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 23.861 -16.182 0.620 28.838 hybrid contribution -1.505 0.774 -0.446 1.750 sum 22.357 -15.408 0.174 27.152 Atomic orbital electron populations 1.69985 1.07689 1.28622 1.50773 1.25590 0.95548 1.02684 0.93583 0.85842 0.79233 0.79230 0.79484 1.18945 1.19779 1.18475 1.21284 0.89912 0.94600 1.52567 0.92292 1.18947 0.93011 0.79836 0.95506 1.45110 1.04655 1.09920 1.77849 1.16217 0.82680 0.83829 0.77909 1.90833 1.56221 1.45082 1.60770 1.44782 1.08490 1.05134 1.80091 1.21881 0.79898 0.96453 1.02564 1.20565 0.87939 0.89816 0.90480 0.85739 1.86602 1.65906 1.67583 1.16420 1.19482 0.97285 1.05378 0.93447 1.20264 0.93800 1.03070 0.99853 1.25939 1.00142 1.09269 0.99611 1.84324 1.07819 1.69172 1.01695 1.25665 0.96858 1.08834 1.03221 0.91832 0.97187 0.97264 0.75970 0.75140 0.92114 0.91513 0.76320 0.82648 0.79747 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 2 C 0.03 1.49 5.47 84.65 0.46 1.96 16 3 Si 0.94 44.47 27.47 68.60 1.88 46.36 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 7 C -0.55 -30.51 9.83 25.60 0.25 -30.26 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 9 C 0.25 12.62 4.50 85.63 0.38 13.01 16 10 N -0.72 -29.82 5.55 -482.29 -2.68 -32.49 16 11 C 0.69 27.10 8.57 179.05 1.53 28.63 16 12 O -0.65 -30.70 16.34 -3.97 -0.06 -30.76 16 13 N -0.73 -19.76 5.45 -478.54 -2.61 -22.37 16 14 C 0.12 2.64 5.32 86.38 0.46 3.10 16 15 C 0.17 2.83 3.39 29.85 0.10 2.93 16 16 H 0.13 1.82 8.11 -2.39 -0.02 1.80 16 17 O -0.56 -9.23 12.90 -148.98 -1.92 -11.16 16 18 C -0.14 -2.23 4.91 -20.92 -0.10 -2.34 16 19 C -0.14 -2.03 9.96 21.22 0.21 -1.82 16 20 C -0.21 -2.79 11.23 66.72 0.75 -2.04 16 21 S 0.11 1.42 23.34 -56.49 -1.32 0.10 16 22 C -0.21 -3.02 10.43 66.72 0.70 -2.33 16 23 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 24 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 25 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 26 H 0.41 14.63 8.33 -92.71 -0.77 13.86 16 27 H 0.41 9.12 8.36 -92.70 -0.78 8.35 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.39 4.44 7.78 -74.06 -0.58 3.86 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.18 1.86 7.14 -2.91 -0.02 1.84 16 Total: -1.00 -72.27 302.43 -2.68 -74.94 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -1.01 Total: 20.24 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.75 Total: 10.85 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -4.99 Total: -110.58 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.99 Total: -41.92 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.10 kcal Total: -72.27 -2.68 -74.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.408 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds