Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47384 * 2 1 4 4 O 1.45204 * 109.46928 * 119.99147 * 2 1 3 5 5 C 1.34220 * 117.00434 * 270.00266 * 4 2 1 6 6 O 1.20830 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00470 * 179.97438 * 5 4 2 8 8 S 1.80993 * 109.47521 * 179.97438 * 7 5 4 9 9 C 1.76200 * 100.00020 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00178 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99885 * 180.02562 * 9 8 7 12 12 N 1.31636 * 120.00082 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99866 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47588 * 59.99423 * 13 11 9 15 15 H 1.48504 * 109.47193 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47206 * 299.99174 * 13 11 9 17 17 C 1.50696 * 109.47536 * 239.99243 * 2 1 3 18 18 C 1.35316 * 126.12483 * 85.29189 * 17 2 1 19 19 C 1.39870 * 107.92161 * 180.15089 * 18 17 2 20 20 N 1.30836 * 108.20019 * 359.59732 * 19 18 17 21 21 N 1.34942 * 126.12855 * 265.00480 * 17 2 1 22 22 C 1.46502 * 126.03991 * 359.97438 * 21 17 2 23 23 H 1.09002 * 109.46821 * 60.00376 * 1 2 3 24 24 H 1.08991 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47224 * 300.00853 * 1 2 3 26 26 H 1.08994 * 109.47286 * 300.00174 * 7 5 4 27 27 H 1.09005 * 109.46478 * 59.99852 * 7 5 4 28 28 H 0.96999 * 119.99909 * 179.97438 * 12 11 9 29 29 H 1.07998 * 126.04386 * 0.03102 * 18 17 2 30 30 H 1.08002 * 125.90382 * 179.86983 * 19 18 17 31 31 H 1.09002 * 109.47159 * 269.97891 * 22 21 17 32 32 H 1.08999 * 109.46542 * 29.97403 * 22 21 17 33 33 H 1.08999 * 109.47324 * 149.97201 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2170 0.0642 2.2811 6 8 1.9981 1.2521 2.2503 7 6 2.7181 -0.5769 3.5497 8 16 2.8900 0.6846 4.8361 9 6 3.4734 -0.3126 6.1665 10 1 3.6163 -1.3736 6.0238 11 6 3.7484 0.2652 7.3982 12 7 3.5738 1.5583 7.5723 13 14 4.3676 -0.7919 8.8083 14 1 5.6485 -1.4349 8.4197 15 1 4.5847 0.0585 10.0062 16 1 3.3624 -1.8395 9.1201 17 6 2.0324 -0.7105 -1.2303 18 6 2.2138 -0.1583 -2.4523 19 6 2.6873 -1.1568 -3.3098 20 7 2.7949 -2.2664 -2.6250 21 7 2.3872 -2.0101 -1.3094 22 6 2.3526 -2.9813 -0.2132 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 2.0086 -1.3365 3.8777 27 1 3.6870 -1.0406 3.3642 28 1 3.7657 1.9620 8.4331 29 1 2.0244 0.8709 -2.7190 30 1 2.9273 -1.0322 -4.3554 31 1 3.3094 -2.9742 0.3089 32 1 1.5570 -2.7153 0.4828 33 1 2.1655 -3.9769 -0.6155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791922013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = -10.290035 kcal Electronic energy + Delta-G solvation = -17988.456828 eV Core-core repulsion = 14949.656232 eV Total energy + Delta-G solvation = -3038.800597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49887 -40.14305 -36.56605 -33.34788 -32.87590 -32.53753 -29.77759 -29.01717 -26.80547 -25.62674 -24.11266 -21.58740 -20.81653 -19.97475 -18.04090 -17.53430 -16.87786 -16.20652 -15.53404 -15.35292 -14.89449 -14.42001 -14.28168 -13.85072 -13.71801 -13.46788 -13.17064 -12.81130 -12.72725 -12.51369 -12.21167 -12.09048 -11.55224 -11.16134 -11.10418 -10.87869 -10.81117 -10.70510 -10.14470 -9.97211 -9.41167 -9.15822 -8.68513 -8.43927 -6.67047 -6.32466 -4.06031 1.65811 2.37330 2.46056 2.51464 2.69123 3.18056 3.18384 3.23509 3.39830 4.09451 4.21404 4.49259 4.75414 4.90267 4.95289 5.03504 5.10091 5.20401 5.32665 5.40820 5.48522 5.51576 5.60128 5.61482 5.66464 5.89063 5.94960 5.96905 6.49680 6.51979 6.82432 7.49654 7.56658 7.99913 8.24524 9.12953 10.74938 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.003806 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.749786 B = 7355.346560 C = 7780.108939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.112 0.888 4 O -0.360 6.360 5 C 0.481 3.519 6 O -0.481 6.481 7 C -0.129 4.129 8 S -0.056 6.056 9 C -0.539 4.539 10 H 0.076 0.924 11 C 0.076 3.924 12 N -0.867 5.867 13 Si 0.922 3.078 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.273 1.273 17 C 0.090 3.910 18 C -0.267 4.267 19 C 0.045 3.955 20 N -0.298 5.298 21 N -0.355 5.355 22 C 0.103 3.897 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.271 0.729 29 H 0.150 0.850 30 H 0.185 0.815 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -6.141 -16.671 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 H 0.130 0.870 4 O -0.279 6.279 5 C 0.322 3.678 6 O -0.366 6.366 7 C -0.277 4.277 8 S 0.171 5.829 9 C -0.687 4.687 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.502 5.502 13 Si 0.748 3.252 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.039 4.039 18 C -0.297 4.297 19 C -0.140 4.140 20 N -0.120 5.120 21 N -0.137 5.137 22 C -0.038 4.038 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.201 0.799 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.487 -5.850 -16.534 18.103 hybrid contribution 0.440 -1.028 0.908 1.441 sum -4.047 -6.878 -15.626 17.546 Atomic orbital electron populations 1.22172 0.92444 1.03315 1.04036 1.21071 0.94804 0.96500 0.78439 0.87041 1.86592 1.78014 1.42830 1.20423 1.23371 0.74176 0.86012 0.84239 1.90675 1.46451 1.16186 1.83286 1.23317 1.04477 1.05975 0.93909 1.85443 1.86776 1.08497 1.02222 1.22793 1.52074 0.96417 0.97373 0.90623 1.25001 0.94854 0.95386 0.98183 1.69996 1.45216 1.09999 1.24957 0.86175 0.79331 0.79652 0.80090 1.19820 1.20736 1.19812 1.20829 1.01060 0.85845 0.96171 1.21147 1.14749 1.01661 0.92101 1.23789 0.99610 0.90332 1.00284 1.77365 1.22265 1.23766 0.88595 1.48521 1.49196 1.07491 1.08482 1.21989 1.04482 0.91166 0.86156 0.90131 0.91679 0.90514 0.87835 0.87937 0.91944 0.83249 0.79854 0.90351 0.88445 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.53 37.16 0.35 -1.35 16 2 C 0.15 1.87 2.93 -27.88 -0.08 1.79 16 3 H 0.11 1.48 7.16 -51.93 -0.37 1.10 16 4 O -0.36 -5.13 7.11 -39.23 -0.28 -5.41 16 5 C 0.48 8.50 7.95 36.01 0.29 8.78 16 6 O -0.48 -9.83 15.08 -18.75 -0.28 -10.11 16 7 C -0.13 -2.46 6.27 36.01 0.23 -2.23 16 8 S -0.06 -1.43 20.57 -107.50 -2.21 -3.64 16 9 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 10 H 0.08 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.29 13.22 55.49 0.73 -24.55 16 13 Si 0.92 20.73 29.55 -169.99 -5.02 15.70 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.09 1.12 6.05 -82.27 -0.50 0.62 16 18 C -0.27 -2.97 10.72 -40.01 -0.43 -3.40 16 19 C 0.04 0.49 12.03 -17.37 -0.21 0.28 16 20 N -0.30 -3.97 12.58 30.62 0.39 -3.58 16 21 N -0.35 -4.56 4.01 -63.89 -0.26 -4.81 16 22 C 0.10 1.07 10.27 59.85 0.61 1.68 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 27 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.95 6.62 -51.93 -0.34 0.61 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -32.68 307.17 -5.91 -38.59 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.06 Total: -0.55 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.46 Total: -6.26 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.86 Total: -32.95 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.56 Total: -15.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.68 -5.91 -38.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791922013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.301 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds