Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47384 * 2 1 4 4 O 1.45204 * 109.46928 * 119.99147 * 2 1 3 5 5 C 1.34220 * 117.00434 * 270.00266 * 4 2 1 6 6 O 1.20830 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00470 * 179.97438 * 5 4 2 8 8 S 1.80993 * 109.47521 * 179.97438 * 7 5 4 9 9 C 1.76200 * 100.00020 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00178 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99885 * 180.02562 * 9 8 7 12 12 N 1.31636 * 120.00082 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99866 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47588 * 59.99423 * 13 11 9 15 15 H 1.48504 * 109.47193 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47206 * 299.99174 * 13 11 9 17 17 C 1.50696 * 109.47536 * 239.99243 * 2 1 3 18 18 C 1.35316 * 126.12483 * 85.29189 * 17 2 1 19 19 C 1.39870 * 107.92161 * 180.15089 * 18 17 2 20 20 N 1.30836 * 108.20019 * 359.59732 * 19 18 17 21 21 N 1.34942 * 126.12855 * 265.00480 * 17 2 1 22 22 C 1.46502 * 126.03991 * 359.97438 * 21 17 2 23 23 H 1.09002 * 109.46821 * 60.00376 * 1 2 3 24 24 H 1.08991 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47224 * 300.00853 * 1 2 3 26 26 H 1.08994 * 109.47286 * 300.00174 * 7 5 4 27 27 H 1.09005 * 109.46478 * 59.99852 * 7 5 4 28 28 H 0.96999 * 119.99909 * 179.97438 * 12 11 9 29 29 H 1.07998 * 126.04386 * 0.03102 * 18 17 2 30 30 H 1.08002 * 125.90382 * 179.86983 * 19 18 17 31 31 H 1.09002 * 109.47159 * 269.97891 * 22 21 17 32 32 H 1.08999 * 109.46542 * 29.97403 * 22 21 17 33 33 H 1.08999 * 109.47324 * 149.97201 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2170 0.0642 2.2811 6 8 1.9981 1.2521 2.2503 7 6 2.7181 -0.5769 3.5497 8 16 2.8900 0.6846 4.8361 9 6 3.4734 -0.3126 6.1665 10 1 3.6163 -1.3736 6.0238 11 6 3.7484 0.2652 7.3982 12 7 3.5738 1.5583 7.5723 13 14 4.3676 -0.7919 8.8083 14 1 5.6485 -1.4349 8.4197 15 1 4.5847 0.0585 10.0062 16 1 3.3624 -1.8395 9.1201 17 6 2.0324 -0.7105 -1.2303 18 6 2.2138 -0.1583 -2.4523 19 6 2.6873 -1.1568 -3.3098 20 7 2.7949 -2.2664 -2.6250 21 7 2.3872 -2.0101 -1.3094 22 6 2.3526 -2.9813 -0.2132 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 2.0086 -1.3365 3.8777 27 1 3.6870 -1.0406 3.3642 28 1 3.7657 1.9620 8.4331 29 1 2.0244 0.8709 -2.7190 30 1 2.9273 -1.0322 -4.3554 31 1 3.3094 -2.9742 0.3089 32 1 1.5570 -2.7153 0.4828 33 1 2.1655 -3.9769 -0.6155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791922013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -30.358827 kcal Electronic energy + Delta-G solvation = -17989.327076 eV Core-core repulsion = 14949.656232 eV Total energy + Delta-G solvation = -3039.670845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44265 -41.43536 -37.88479 -34.60855 -34.30250 -33.82080 -31.23357 -29.96698 -27.71344 -27.62796 -25.15317 -22.68019 -21.90255 -20.94499 -19.91029 -18.81550 -18.09500 -17.47799 -16.89508 -16.64972 -16.45544 -16.02467 -15.35329 -14.97799 -14.64276 -14.54383 -14.46874 -14.30804 -13.71458 -13.55251 -13.33488 -13.21205 -12.99423 -12.87574 -12.66831 -12.49204 -12.01058 -11.81134 -11.63460 -11.59497 -11.14424 -10.38205 -10.32731 -9.56610 -8.73188 -8.37425 -6.16909 0.70361 0.99767 1.08888 1.40428 1.44684 1.53104 1.57135 1.76279 1.87610 2.23912 2.97912 3.17956 3.31143 3.67209 3.69505 3.91581 3.97367 4.17160 4.35141 4.40383 4.42906 4.55929 4.63046 4.67551 4.73578 4.76578 5.04953 5.05748 5.26019 5.41110 5.70400 5.95105 6.17821 6.60602 6.70035 7.04634 8.71411 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.003806 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.749786 B = 7355.346560 C = 7780.108939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.104 0.896 4 O -0.346 6.346 5 C 0.492 3.508 6 O -0.513 6.513 7 C -0.108 4.108 8 S -0.135 6.135 9 C -0.549 4.549 10 H 0.087 0.913 11 C 0.017 3.983 12 N -0.910 5.910 13 Si 0.997 3.003 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.261 1.261 17 C 0.074 3.926 18 C -0.267 4.267 19 C 0.046 3.954 20 N -0.327 5.327 21 N -0.367 5.367 22 C 0.098 3.902 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.272 0.728 29 H 0.171 0.829 30 H 0.217 0.783 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -7.674 -17.559 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.092 3.908 3 H 0.122 0.878 4 O -0.264 6.264 5 C 0.334 3.666 6 O -0.400 6.400 7 C -0.257 4.257 8 S 0.092 5.908 9 C -0.697 4.697 10 H 0.105 0.895 11 C -0.188 4.188 12 N -0.546 5.546 13 Si 0.819 3.181 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.055 4.055 18 C -0.296 4.296 19 C -0.138 4.138 20 N -0.150 5.150 21 N -0.149 5.149 22 C -0.043 4.043 23 H 0.120 0.880 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.189 0.811 30 H 0.234 0.766 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.498 -7.406 -17.445 19.479 hybrid contribution 0.411 -0.570 0.994 1.218 sum -4.087 -7.977 -16.451 18.734 Atomic orbital electron populations 1.22156 0.90773 1.03944 1.04497 1.21256 0.96074 0.95951 0.77519 0.87798 1.86562 1.77575 1.42073 1.20153 1.22984 0.73528 0.85416 0.84647 1.90674 1.47937 1.17508 1.83888 1.23095 1.06241 1.03879 0.92440 1.85546 1.87106 1.12909 1.05280 1.23168 1.51791 0.96925 0.97823 0.89528 1.26086 0.94843 0.96668 1.01182 1.70153 1.46613 1.12075 1.25739 0.85017 0.79112 0.77808 0.76180 1.18741 1.20481 1.18561 1.20925 1.02008 0.86131 0.96416 1.21516 1.13776 1.02745 0.91563 1.24397 0.98281 0.89481 1.01635 1.77332 1.23385 1.25141 0.89111 1.48739 1.49553 1.07851 1.08797 1.22117 1.04499 0.91686 0.85949 0.88010 0.90937 0.91682 0.85622 0.86202 0.91858 0.81111 0.76614 0.90530 0.88069 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.53 71.98 0.69 -2.35 16 2 C 0.15 3.54 2.93 29.85 0.09 3.63 16 3 H 0.10 2.68 7.16 -2.39 -0.02 2.66 16 4 O -0.35 -9.43 7.11 -51.32 -0.36 -9.80 16 5 C 0.49 17.06 7.95 71.24 0.57 17.62 16 6 O -0.51 -21.06 15.08 21.95 0.33 -20.73 16 7 C -0.11 -4.02 6.27 71.24 0.45 -3.57 16 8 S -0.14 -7.07 20.57 -56.49 -1.16 -8.23 16 9 C -0.55 -29.95 9.50 67.96 0.65 -29.30 16 10 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 11 C 0.02 0.96 5.49 84.86 0.47 1.42 16 12 N -0.91 -53.92 13.22 21.65 0.29 -53.64 16 13 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 17 C 0.07 1.72 6.05 41.40 0.25 1.97 16 18 C -0.27 -5.32 10.72 21.99 0.24 -5.09 16 19 C 0.05 0.91 12.03 85.24 1.03 1.94 16 20 N -0.33 -8.18 12.58 -57.02 -0.72 -8.89 16 21 N -0.37 -8.87 4.01 -356.03 -1.43 -10.29 16 22 C 0.10 1.89 10.27 127.77 1.31 3.20 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.13 4.13 8.14 -2.40 -0.02 4.11 16 27 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.82 6.62 -2.39 -0.02 1.80 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -70.86 307.17 5.80 -65.05 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.11 Total: 13.00 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.72 Total: -10.53 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.86 Total: -72.83 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.03 Total: -30.53 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.16 Total: -8.23 kcal Total: -70.86 5.80 -65.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791922013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.695 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds