Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47458 * 2 1 4 4 O 1.45205 * 109.46912 * 240.00614 * 2 1 3 5 5 C 1.34225 * 117.00394 * 89.99887 * 4 2 1 6 6 O 1.20826 * 119.99835 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00354 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.47180 * 180.02562 * 7 5 4 9 9 C 1.76205 * 99.99790 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00013 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99655 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00601 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99941 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47055 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47138 * 119.99852 * 13 11 9 16 16 H 1.48494 * 109.47371 * 240.00020 * 13 11 9 17 17 C 1.50700 * 109.47405 * 120.00635 * 2 1 3 18 18 C 1.35316 * 126.12628 * 85.02097 * 17 2 1 19 19 C 1.39875 * 107.91722 * 179.97438 * 18 17 2 20 20 N 1.30829 * 108.20298 * 0.02562 * 19 18 17 21 21 N 1.34946 * 126.12502 * 264.99683 * 17 2 1 22 22 C 1.46500 * 126.03644 * 0.04123 * 21 17 2 23 23 H 1.09001 * 109.46848 * 299.99555 * 1 2 3 24 24 H 1.08995 * 109.47031 * 59.99281 * 1 2 3 25 25 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46696 * 299.99724 * 7 5 4 27 27 H 1.08999 * 109.47223 * 59.99411 * 7 5 4 28 28 H 0.97000 * 120.00618 * 179.97438 * 12 11 9 29 29 H 1.07999 * 126.03957 * 0.24045 * 18 17 2 30 30 H 1.08004 * 125.89555 * 179.97438 * 19 18 17 31 31 H 1.08995 * 109.47195 * 269.94647 * 22 21 17 32 32 H 1.08996 * 109.47070 * 29.94956 * 22 21 17 33 33 H 1.09003 * 109.47068 * 149.95013 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0641 -2.2812 6 8 1.9973 1.2518 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 16 2.8900 0.6845 -4.8361 9 6 3.4735 -0.3128 -6.1665 10 1 3.6171 -1.3736 -6.0235 11 6 3.7485 0.2651 -7.3981 12 7 3.5730 1.5579 -7.5726 13 14 4.3677 -0.7920 -8.8083 14 1 4.4788 -2.2027 -8.3578 15 1 3.4149 -0.7094 -9.9444 16 1 5.7010 -0.3046 -9.2440 17 6 2.0324 -0.7105 1.2304 18 6 2.2090 -2.0454 1.3645 19 6 2.6882 -2.2884 2.6560 20 7 2.7951 -1.1408 3.2749 21 7 2.3873 -0.1295 2.3955 22 6 2.3515 1.3054 2.6890 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.6871 -1.0406 -3.3641 27 1 2.0086 -1.3367 -3.8776 28 1 3.7655 1.9618 -8.4332 29 1 2.0180 -2.7909 0.6068 30 1 2.9279 -3.2564 3.0707 31 1 3.3080 1.7548 2.4221 32 1 1.5555 1.7747 2.1110 33 1 2.1645 1.4541 3.7525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791922014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = -28.790678 kcal Electronic energy + Delta-G solvation = -17799.058969 eV Core-core repulsion = 14759.456125 eV Total energy + Delta-G solvation = -3039.602845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.44142 -41.45846 -37.86423 -34.61056 -34.60247 -33.59038 -31.17473 -30.03490 -27.70892 -27.68007 -25.15655 -22.84728 -21.83894 -20.76725 -19.92732 -18.69079 -18.29025 -17.45334 -16.89905 -16.77478 -16.49335 -16.05653 -15.50622 -15.04434 -14.66369 -14.58413 -14.49987 -14.02429 -13.72061 -13.52741 -13.32586 -13.20158 -13.12500 -12.91606 -12.64248 -12.28163 -12.08317 -11.83509 -11.75325 -11.55175 -11.16878 -10.38178 -10.36651 -9.58997 -8.72578 -8.37199 -6.16435 0.58126 0.98803 1.07933 1.37388 1.42878 1.49364 1.58898 1.80145 1.98040 2.24176 2.98317 3.18561 3.29206 3.60502 3.70323 3.79263 3.91859 4.18348 4.27654 4.33037 4.44959 4.54868 4.57945 4.60245 4.67536 4.75282 5.04298 5.07666 5.28581 5.42574 5.67493 5.90434 6.19108 6.60230 6.65403 7.05215 8.72163 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.003587 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.944242 B = 7803.765626 C = 8114.342849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 H 0.090 0.910 4 O -0.337 6.337 5 C 0.492 3.508 6 O -0.514 6.514 7 C -0.109 4.109 8 S -0.134 6.134 9 C -0.548 4.548 10 H 0.086 0.914 11 C 0.017 3.983 12 N -0.910 5.910 13 Si 0.999 3.001 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.274 1.274 17 C 0.066 3.934 18 C -0.252 4.252 19 C 0.045 3.955 20 N -0.317 5.317 21 N -0.373 5.373 22 C 0.084 3.916 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.272 0.728 29 H 0.161 0.839 30 H 0.217 0.783 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -6.413 18.389 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.094 3.906 3 H 0.108 0.892 4 O -0.254 6.254 5 C 0.334 3.666 6 O -0.402 6.402 7 C -0.257 4.257 8 S 0.093 5.907 9 C -0.695 4.695 10 H 0.104 0.896 11 C -0.188 4.188 12 N -0.546 5.546 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.200 1.200 17 C -0.061 4.061 18 C -0.282 4.282 19 C -0.140 4.140 20 N -0.139 5.139 21 N -0.157 5.157 22 C -0.056 4.056 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.179 0.821 30 H 0.233 0.767 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.477 -4.035 19.495 20.406 hybrid contribution 0.436 -1.728 -1.645 2.425 sum -4.041 -5.763 17.850 19.188 Atomic orbital electron populations 1.22147 0.90579 1.04611 1.04017 1.20890 0.95957 0.95182 0.78585 0.89187 1.86555 1.77331 1.41855 1.19658 1.23007 0.73514 0.85391 0.84659 1.90655 1.48169 1.17431 1.83939 1.23097 1.06294 1.03901 0.92394 1.85492 1.87114 1.12864 1.05237 1.23235 1.51583 0.96940 0.97790 0.89578 1.26087 0.94854 0.96693 1.01165 1.70159 1.46709 1.12066 1.25664 0.84904 0.77821 0.78435 0.76802 1.18040 1.19892 1.19987 1.20579 1.02454 0.94390 0.88709 1.21569 1.12449 0.94740 0.99409 1.24418 0.98352 0.97964 0.93265 1.77334 1.22832 0.96573 1.17194 1.48731 1.50251 1.08067 1.08673 1.22224 1.04473 0.73575 1.05303 0.88671 0.91640 0.90005 0.86173 0.85698 0.91857 0.82149 0.76702 0.90109 0.87899 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.53 71.98 0.69 -2.42 16 2 C 0.15 3.71 2.64 29.85 0.08 3.79 16 3 H 0.09 2.32 6.51 -2.39 -0.02 2.31 16 4 O -0.34 -9.97 9.58 -51.37 -0.49 -10.46 16 5 C 0.49 17.76 7.95 71.24 0.57 18.33 16 6 O -0.51 -21.39 15.08 21.96 0.33 -21.06 16 7 C -0.11 -4.19 6.27 71.24 0.45 -3.75 16 8 S -0.13 -7.08 20.58 -56.49 -1.16 -8.24 16 9 C -0.55 -30.19 9.50 67.95 0.65 -29.55 16 10 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 11 C 0.02 0.95 5.49 84.86 0.47 1.41 16 12 N -0.91 -54.06 13.22 21.65 0.29 -53.77 16 13 Si 1.00 42.39 29.55 68.60 2.03 44.42 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 C 0.07 1.57 6.00 41.41 0.25 1.82 16 18 C -0.25 -5.63 10.37 21.99 0.23 -5.40 16 19 C 0.04 0.91 12.03 85.24 1.03 1.94 16 20 N -0.32 -7.68 12.58 -57.02 -0.72 -8.40 16 21 N -0.37 -8.42 4.01 -356.04 -1.43 -9.85 16 22 C 0.08 1.27 11.06 127.77 1.41 2.68 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 27 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.19 7.54 -2.39 -0.02 1.18 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.70 310.03 5.76 -65.94 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.11 Total: 12.56 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.80 Total: -11.15 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.86 Total: -72.02 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.16 Total: -31.52 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.16 Total: -8.24 kcal Total: -71.70 5.76 -65.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791922014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.146 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds