Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48507 * 109.46915 * 269.99681 * 3 2 1 5 5 H 1.48494 * 109.47283 * 29.99570 * 3 2 1 6 6 H 1.48506 * 109.47422 * 150.00056 * 3 2 1 7 7 C 1.38801 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47128 * 180.02562 * 16 14 13 18 18 C 1.34943 * 126.03868 * 125.00304 * 17 16 14 19 19 C 1.35318 * 107.74756 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91874 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20133 * 359.73987 * 20 19 18 22 22 H 0.96994 * 120.00112 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 24 24 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 25 25 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 26 26 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 27 27 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 28 28 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 29 29 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 30 30 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 31 31 H 1.08004 * 126.12840 * 359.94912 * 18 17 16 32 32 H 1.07995 * 126.03848 * 179.97438 * 19 18 17 33 33 H 1.07997 * 125.89826 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1516 -6.3077 0.0018 13 8 2.6425 -7.6674 0.0018 14 6 3.5489 -8.6575 0.0018 15 8 4.7286 -8.3966 0.0023 16 6 3.0950 -10.0946 0.0024 17 7 4.2650 -10.9762 0.0029 18 6 4.5224 -11.9534 0.8972 19 6 5.6948 -12.5326 0.5493 20 6 6.1700 -11.8875 -0.5971 21 7 5.3108 -10.9583 -0.9290 22 1 -0.4850 0.8400 0.0004 23 1 3.1246 -3.7313 0.8906 24 1 3.1246 -3.7313 -0.8894 25 1 1.3706 -5.4846 -0.8885 26 1 1.3712 -5.4840 0.8914 27 1 3.7601 -6.1471 0.8918 28 1 3.7603 -6.1480 -0.8882 29 1 2.4959 -10.2860 0.8927 30 1 2.4953 -10.2866 -0.8872 31 1 3.9036 -12.2245 1.7398 32 1 6.1782 -13.3487 1.0657 33 1 7.0855 -12.1196 -1.1209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805356646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = -13.017590 kcal Electronic energy + Delta-G solvation = -16995.575200 eV Core-core repulsion = 13956.656328 eV Total energy + Delta-G solvation = -3038.918872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53272 -40.37858 -36.86911 -33.88688 -33.43419 -32.46612 -30.40219 -28.46786 -26.36028 -25.43064 -22.33624 -21.41748 -21.37563 -20.62961 -18.04558 -17.66913 -17.38555 -16.91152 -16.45382 -15.34565 -14.84025 -14.68488 -14.57803 -14.11685 -13.94535 -13.33153 -13.27503 -12.97692 -12.73931 -12.47780 -12.15177 -11.40723 -11.18913 -11.03472 -11.00151 -10.91104 -10.76232 -10.65922 -10.35868 -9.75866 -9.63721 -9.09803 -8.93590 -8.39108 -6.59403 -6.27054 -3.98352 1.47331 1.93252 1.95399 2.56441 2.61834 3.19768 3.20430 3.27384 3.49755 4.13932 4.17819 4.39980 4.49972 4.61529 4.76175 5.05089 5.09754 5.12184 5.23684 5.34395 5.42848 5.45434 5.70849 5.72520 5.82216 6.09460 6.32989 6.33628 6.40102 6.58983 6.62216 7.40820 7.54172 7.57050 8.32702 9.19435 10.81113 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062913 B = 0.002515 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.951009 B =11131.378376 C =11436.809537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.075 3.925 13 O -0.354 6.354 14 C 0.444 3.556 15 O -0.481 6.481 16 C 0.146 3.854 17 N -0.372 5.372 18 C 0.055 3.945 19 C -0.269 4.269 20 C 0.044 3.956 21 N -0.271 5.271 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.176 0.824 32 H 0.149 0.851 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -24.150 1.871 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.271 6.271 14 C 0.283 3.717 15 O -0.366 6.366 16 C 0.022 3.978 17 N -0.156 5.156 18 C -0.090 4.090 19 C -0.299 4.299 20 C -0.144 4.144 21 N -0.091 5.091 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.146 0.854 31 H 0.194 0.806 32 H 0.167 0.833 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.775 -23.058 1.056 23.570 hybrid contribution 2.206 0.756 0.648 2.420 sum 6.981 -22.302 1.704 23.431 Atomic orbital electron populations 1.70012 1.05928 1.27445 1.47100 1.25022 0.95108 0.99146 0.94497 0.86141 0.79435 0.81398 0.78419 1.20216 1.20713 1.19658 1.22692 0.94593 0.90642 1.58735 0.90833 1.84638 1.08729 0.99259 1.96890 1.23183 1.03494 0.96289 1.03387 1.21291 0.96356 0.91547 1.04371 1.23318 0.97883 0.76029 1.02753 1.86439 1.39948 1.17039 1.83649 1.23434 0.85323 0.88683 0.74261 1.90758 1.18284 1.84416 1.43145 1.20978 0.85158 0.83784 1.07839 1.48159 1.18576 1.26785 1.22065 1.22583 0.98865 0.91613 0.95901 1.21535 0.98515 1.07612 1.02196 1.23975 0.99366 0.94063 0.96979 1.77529 0.97417 1.21220 1.12899 0.92225 0.91733 0.91692 0.90245 0.90295 0.91096 0.90991 0.84352 0.85389 0.80639 0.83295 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.77 9.50 30.94 0.29 -14.48 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 11 C -0.10 -1.55 5.60 -26.73 -0.15 -1.69 16 12 C 0.07 1.07 5.47 37.16 0.20 1.27 16 13 O -0.35 -4.54 10.22 -39.27 -0.40 -4.94 16 14 C 0.44 5.48 7.99 36.01 0.29 5.77 16 15 O -0.48 -7.87 15.47 -18.75 -0.29 -8.16 16 16 C 0.15 1.13 7.10 -5.20 -0.04 1.10 16 17 N -0.37 -3.79 3.39 -62.55 -0.21 -4.00 16 18 C 0.05 0.42 11.45 -17.22 -0.20 0.22 16 19 C -0.27 -2.19 10.80 -40.01 -0.43 -2.62 16 20 C 0.04 0.43 12.03 -17.37 -0.21 0.23 16 21 N -0.27 -3.48 11.66 30.62 0.36 -3.12 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 24 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.14 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -35.90 312.71 -6.74 -42.65 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.19 Total: -2.71 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.13 Total: -10.35 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.88 Total: -32.17 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.69 Total: -13.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.90 -6.74 -42.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805356646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.629 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds